RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PGPEP1Q9NXJ5 209 aa11.46□□□□□ -0.57
VIM-205ENST00000485947 CHTOPQ9Y3Y2 248 aaKnown RBP11.46□□□□□ -0.57
VIM-205ENST00000485947 IGLV4-60A0A075B6I1 120 aa11.45□□□□□ -0.58
VIM-205ENST00000485947 CDPF1Q6NVV7 123 aa11.45□□□□□ -0.58
VIM-205ENST00000485947 PLNP26678 52 aa11.44□□□□□ -0.58
VIM-205ENST00000485947 MRPL35Q9NZE8 188 aaKnown RBP11.44□□□□□ -0.58
VIM-205ENST00000485947 DPM2O94777 84 aa11.43□□□□□ -0.58
VIM-205ENST00000485947 RNASE13Q5GAN3 156 aaKnown RBP11.43□□□□□ -0.58
VIM-205ENST00000485947 IGKCP01834 107 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 UBE2D1P51668 147 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 SEC11AP67812 179 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 ZC2HC1BQ5TFG8 222 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 FAM19A3Q7Z5A8 133 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 PMCHL2Q9BQD1 86 aa11.42□□□□□ -0.58
VIM-205ENST00000485947 IGLV4-69A0A075B6H9 119 aa11.41□□□□□ -0.58
VIM-205ENST00000485947 CCL25O15444 150 aa11.41□□□□□ -0.58
VIM-205ENST00000485947 ANGP03950 147 aaKnown RBP11.41□□□□□ -0.58
VIM-205ENST00000485947 IGLC3P0DOY3 106 aa11.41□□□□□ -0.58
VIM-205ENST00000485947 IBA57-AS1B1ANH7 110 aa11.4□□□□□ -0.58
VIM-205ENST00000485947 TINCRA0A1B0GVN0 87 aa11.39□□□□□ -0.59
VIM-205ENST00000485947 KRTAP10-2P60368 255 aa11.39□□□□□ -0.59
VIM-205ENST00000485947 A0A087WTM6 91 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 A0A0J9YXV3 536 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 IGHV3-30P01768 117 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 IGHV3-33P01772 117 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 IGHV3-30-3P0DP02 117 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 IGHV3-30-5P0DP03 117 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 CHAC1Q9BUX1 264 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 PRR34Q9NV39 138 aa11.38□□□□□ -0.59
VIM-205ENST00000485947 TRAV13-1A0A0B4J241 112 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 LINC00959A0A1B0GUT2 108 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 C11orf86A6NJI1 115 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 HERVK_113P63121 156 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 S100A12P80511 92 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 REG3AQ06141 175 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 LINC00518Q8N0U6 118 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 ATOH7Q8N100 152 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 LINC00269Q8N2A0 174 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 Q8N3U1 123 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 KLK12Q9UKR0 248 aa11.37□□□□□ -0.59
VIM-205ENST00000485947 HSBP1L1C9JCN9 74 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 CRPP02741 224 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 SS18Q15532 418 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 LINC00242Q5T6M2 205 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 C12orf57Q99622 126 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 VAMP8Q9BV40 100 aa11.36□□□□□ -0.59
VIM-205ENST00000485947 GEMIN7Q9H840 131 aaKnown RBP11.36□□□□□ -0.59
VIM-205ENST00000485947 TM2D2Q9BX73 214 aa11.35□□□□□ -0.59
VIM-205ENST00000485947 IGLV5-45A0A087WSX0 123 aa11.34□□□□□ -0.59
VIM-205ENST00000485947 TRAV8-3A0A0A6YYJ7 113 aa11.34□□□□□ -0.59
VIM-205ENST00000485947 IGKV3OR2-268A0A0C4DH90 116 aa11.34□□□□□ -0.59
VIM-205ENST00000485947 PSCAO43653 123 aa11.34□□□□□ -0.59
VIM-205ENST00000485947 ZNF22P17026 224 aaPredicted RBP11.34□□□□□ -0.59
VIM-205ENST00000485947 TRAV8-4A0A0B4J246 113 aa11.33□□□□□ -0.6
VIM-205ENST00000485947 MIAQ16674 131 aa11.33□□□□□ -0.6
VIM-205ENST00000485947 TMEM170BQ5T4T1 132 aa11.33□□□□□ -0.6
VIM-205ENST00000485947 CLPSL2Q6UWE3 100 aa11.33□□□□□ -0.6
VIM-205ENST00000485947 NTN5Q8WTR8 489 aaPredicted RBP11.33□□□□□ -0.6
VIM-205ENST00000485947 H3BRM9 83 aa11.32□□□□□ -0.6
VIM-205ENST00000485947 HERVK_113P61574 105 aa11.32□□□□□ -0.6
VIM-205ENST00000485947 ENHOQ6UWT2 76 aa11.32□□□□□ -0.6
VIM-205ENST00000485947 COX11Q9Y6N1 276 aa11.32□□□□□ -0.6
VIM-205ENST00000485947 hDV102S1A0JD36 115 aa11.31□□□□□ -0.6
VIM-205ENST00000485947 LINC00469Q8N7U9 141 aa11.31□□□□□ -0.6
VIM-205ENST00000485947 MAPKAPK5-AS1Q8N8E1 139 aa11.31□□□□□ -0.6
VIM-205ENST00000485947 UBE2WQ96B02 151 aa11.31□□□□□ -0.6
VIM-205ENST00000485947 TMEM223A0PJW6 202 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 LRCOL1A6NCL2 159 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 COX6A2Q02221 97 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 SPATA45Q537H7 98 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 Q8N1X5 172 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 PAM16Q9Y3D7 125 aa11.3□□□□□ -0.6
VIM-205ENST00000485947 MAJINQ3KP22 176 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 CD164L2Q6UWJ8 174 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 LINC01561Q8N1V8 128 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 STPG4Q8N801 248 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 CHCHD10Q8WYQ3 142 aaPredicted RBP11.29□□□□□ -0.6
VIM-205ENST00000485947 RMI2Q96E14 147 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 CDKN2A-AS1Q9UH64 79 aa11.29□□□□□ -0.6
VIM-205ENST00000485947 LRP1BQ9NZR2 4599 aa11.28□□□□□ -0.6
VIM-205ENST00000485947 IGHV3OR16-9A0A0B4J2B5 98 aa11.28□□□□□ -0.6
VIM-205ENST00000485947 E9PLD3 99 aa11.28□□□□□ -0.6
VIM-205ENST00000485947 XCL1P47992 114 aa11.27□□□□□ -0.61
VIM-205ENST00000485947 ANKRD39Q53RE8 183 aa11.27□□□□□ -0.61
VIM-205ENST00000485947 Q9HAA7 133 aa11.27□□□□□ -0.61
VIM-205ENST00000485947 DMBT1Q9UGM3 2413 aaPredicted RBP11.26□□□□□ -0.61
VIM-205ENST00000485947 A0A087WZ39 114 aa11.26□□□□□ -0.61
VIM-205ENST00000485947 GCSHP23434 173 aa11.26□□□□□ -0.61
VIM-205ENST00000485947 IGLV10-54A0A075B6I4 117 aa11.25□□□□□ -0.61
VIM-205ENST00000485947 Q8N814 137 aa11.25□□□□□ -0.61
VIM-205ENST00000485947 C1orf43Q9BWL3 253 aa11.25□□□□□ -0.61
VIM-205ENST00000485947 IGHV1-58A0A0C4DH39 117 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 GAGE12HA6NDE8 117 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 SMIM1B2RUZ4 78 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 COX7A2LO14548 114 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 LEPROTO15243 131 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 FOXI1Q12951 378 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 PLEKHB2Q96CS7 222 aa11.24□□□□□ -0.61
VIM-205ENST00000485947 IGLV5-52A0A0A0MRZ9 124 aa11.23□□□□□ -0.61
VIM-205ENST00000485947 IGLV5-39A0A0G2JS06 123 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms