RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 AMELXQ99217 191 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 HSPB8Q9UJY1 196 aa5.46□□□□□ -1.54
SF3A1-208ENST00000485618 F8WDY8 70 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 GCSHP23434 173 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 UBE2D1P51668 147 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 KRTAP26-1Q6PEX3 210 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 LINC01561Q8N1V8 128 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 OPRPNQ99935 248 aaPredicted RBP5.45□□□□□ -1.54
SF3A1-208ENST00000485618 CST9LQ9H4G1 147 aa5.45□□□□□ -1.54
SF3A1-208ENST00000485618 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.44□□□□□ -1.54
SF3A1-208ENST00000485618 H3BRM9 83 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 CDK2AP2O75956 126 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 PRSS2P07478 247 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 C5orf38Q86SI9 138 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 OR10D4PQ8NGN7 298 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 PACRGQ96M98 296 aaPredicted RBP5.44□□□□□ -1.54
SF3A1-208ENST00000485618 HSPG2P98160 4391 aa5.44□□□□□ -1.54
SF3A1-208ENST00000485618 DNAH17Q9UFH2 4485 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 A0A087WZ39 114 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 GVQW2A0A096LPI5 108 aaPredicted RBP5.43□□□□□ -1.54
SF3A1-208ENST00000485618 IGHV3OR16-9A0A0B4J2B5 98 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 TINCRA0A1B0GVN0 87 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 SERF1AO75920 110 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 LEPROTL1O95214 131 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 CNBPP62633 177 aaKnown RBP5.43□□□□□ -1.54
SF3A1-208ENST00000485618 PMCHL1Q16048 86 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 PDZD11Q5EBL8 140 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 LINC00242Q5T6M2 205 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 IFI27L1Q96BM0 104 aa5.43□□□□□ -1.54
SF3A1-208ENST00000485618 IGHV3-64A0A075B6Q5 118 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BKO60814 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BJP06899 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BOP23527 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BBP33778 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BDP58876 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 KRTAP10-2P60368 255 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BCP62807 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST2H2BEQ16778 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.42□□□□□ -1.54
SF3A1-208ENST00000485618 FAM19A3Q7Z5A8 133 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BHQ93079 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 FAM104AQ969W3 186 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 URB1-AS1Q96HZ7 61 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BNQ99877 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 HIST1H2BMQ99879 126 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 PKD1P98161 4303 aa5.42□□□□□ -1.54
SF3A1-208ENST00000485618 TRAV12-1A0A0B4J245 112 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 S100A6P06703 90 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 CKS1BP61024 79 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 WFDC2Q14508 124 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 HIGD2BQ4VC39 106 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 LINC00469Q8N7U9 141 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 ORAOV1Q8WV07 137 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 C2orf48Q96LS8 159 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 MAP1LC3CQ9BXW4 147 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 LINC00474Q9P2X8 69 aa5.41□□□□□ -1.54
SF3A1-208ENST00000485618 IGLV4-69A0A075B6H9 119 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 A0A096LNJ9 63 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 A0A0J9YXV3 536 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 AKR1D1P51857 326 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 SPAG11BQ08648 103 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 SYCNQ0VAF6 134 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 C6orf226Q5I0X4 101 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 LINC00173Q6ZV60 143 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 Q8N1X5 172 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 FAM19A2Q8N3H0 131 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 C15orf56Q8N910 161 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 C9orf163Q8N9P6 203 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 DPH3Q96FX2 82 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 CAMK2N2Q96S95 79 aa5.4□□□□□ -1.54
SF3A1-208ENST00000485618 CHTOPQ9Y3Y2 248 aaKnown RBP5.4□□□□□ -1.54
SF3A1-208ENST00000485618 NDUFA1O15239 70 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 IGLC3P0DOY3 106 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 FABP4P15090 132 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 PLNP26678 52 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 COX6A2Q02221 97 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 COA6Q5JTJ3 125 aaKnown RBP5.39□□□□□ -1.55
SF3A1-208ENST00000485618 SFTA2Q6UW10 78 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 CARD19Q96LW7 228 aa5.39□□□□□ -1.55
SF3A1-208ENST00000485618 F8VRH5 84 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 CXCL5P42830 114 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 RNF151Q2KHN1 245 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 TMEM170BQ5T4T1 132 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 ZC2HC1BQ5TFG8 222 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 CHAC1Q9BUX1 264 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 TOMM7Q9P0U1 55 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 CDKN2A-AS1Q9UH64 79 aa5.38□□□□□ -1.55
SF3A1-208ENST00000485618 IGLV5-45A0A087WSX0 123 aa5.37□□□□□ -1.55
SF3A1-208ENST00000485618 H0Y8G0 127 aa5.37□□□□□ -1.55
SF3A1-208ENST00000485618 S100A2P29034 98 aa5.37□□□□□ -1.55
SF3A1-208ENST00000485618 Q8IZM0 81 aa5.37□□□□□ -1.55
SF3A1-208ENST00000485618 MRPL35Q9NZE8 188 aaKnown RBP5.37□□□□□ -1.55
SF3A1-208ENST00000485618 TRBV30A0A0K0K1B3 111 aa5.36□□□□□ -1.55
SF3A1-208ENST00000485618 LOC107984640A0A0U1RRK4 108 aa5.36□□□□□ -1.55
SF3A1-208ENST00000485618 C20orf202A1L168 122 aa5.36□□□□□ -1.55
SF3A1-208ENST00000485618 HERVK_113P61574 105 aa5.36□□□□□ -1.55
SF3A1-208ENST00000485618 LRP1BQ9NZR2 4599 aa5.36□□□□□ -1.55
SF3A1-208ENST00000485618 NUPR1O60356 82 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 DPM2O94777 84 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 FUSP35637 526 aaKnown RBP eCLIP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms