RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 BCE1O60756 84 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 APCSP02743 223 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 TLX1NBP0CAT3 122 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 BTCP35070 178 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 UBE2G1P62253 170 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 HIST1H2BAQ96A08 127 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 TPPP3Q9BW30 176 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 SMDT1Q9H4I9 107 aa2.93□□□□□ -1.94
PTPN4-210ENST00000485247 C1orf196B1AJZ1 125 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 G3V3Q6 166 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 NDUFA1O15239 70 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 SIX6O95475 246 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 ATP6V1G2O95670 118 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 NCR2O95944 276 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 CXorf1O96002 111 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 LTAP01374 205 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 CXCL1P09341 107 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 DEFA1P59665 94 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 TMEM241Q24JQ0 296 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 C9orf129Q5T035 196 aaKnown RBP2.92□□□□□ -1.94
PTPN4-210ENST00000485247 UNQ6190/PRO20217Q6UXQ8 127 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 DAND5Q8N907 189 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 FMC1Q96HJ9 113 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 CDC42SE2Q9NRR3 84 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 C6orf48Q9UBA6 75 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 HSPB11Q9Y547 144 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 ALG5Q9Y673 324 aa2.92□□□□□ -1.94
PTPN4-210ENST00000485247 TRAV13-1A0A0B4J241 112 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 CENPXA8MT69 81 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 PCOTHQ58A44 107 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 ADAMTSL4-AS1Q5T5F5 129 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 TRIQKQ629K1 86 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 SPAG11AQ6PDA7 123 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 COX6B2Q6YFQ2 88 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 C3orf22Q8N5N4 141 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 ORAOV1Q8WV07 137 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 RPL39LQ96EH5 51 aaKnown RBP2.91□□□□□ -1.94
PTPN4-210ENST00000485247 ALKBH7Q9BT30 221 aaPredicted RBP2.91□□□□□ -1.94
PTPN4-210ENST00000485247 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 C22orf24Q9Y442 160 aa2.91□□□□□ -1.94
PTPN4-210ENST00000485247 FAM74A7A6NL05 159 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 CTRLP40313 264 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 CNPY1Q3B7I2 92 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 KRTAP6-3Q3LI67 103 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 RNASE13Q5GAN3 156 aaKnown RBP2.9□□□□□ -1.95
PTPN4-210ENST00000485247 GATD1Q8NB37 220 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 OR10D4PQ8NGN7 298 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 KIR2DL4Q99706 377 aa2.9□□□□□ -1.95
PTPN4-210ENST00000485247 ACTR3CQ9C0K3 210 aaPredicted RBP2.9□□□□□ -1.95
PTPN4-210ENST00000485247 RPL37AP8A6NKH3 93 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 NDUFC2-KCTD14E9PQ53 114 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 F8WDY8 70 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 TRGC1P0CF51 173 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 S100A5P33763 92 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 AKR1C3P42330 323 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 UBE2AP49459 152 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 MRAP2Q96G30 205 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 FAM218AQ96MZ4 157 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 MARVELD1Q9BSK0 173 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 NKX6-2Q9C056 277 aaPredicted RBP2.89□□□□□ -1.95
PTPN4-210ENST00000485247 NUDT15Q9NV35 164 aa2.89□□□□□ -1.95
PTPN4-210ENST00000485247 SDHAF1A6NFY7 115 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 INMT-MINDY4F8WBC2 141 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 I3L3M4 83 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 MBP02144 154 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 IGLC6P0CF74 106 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 PMCHP20382 165 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 ATP6V0CP27449 155 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 MRPL55Q7Z7F7 128 aaKnown RBP2.88□□□□□ -1.95
PTPN4-210ENST00000485247 MRPL52Q86TS9 123 aaKnown RBP2.88□□□□□ -1.95
PTPN4-210ENST00000485247 LINC00469Q8N7U9 141 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 STOML3Q8TAV4 291 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 NDUFA12Q9UI09 145 aa2.88□□□□□ -1.95
PTPN4-210ENST00000485247 CCDC160A6NGH7 325 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 ZNF726P1Q15940 193 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 KRTAP20-1Q3LI63 56 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 C2orf82Q6UX34 121 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 BAGE2Q86Y30 109 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 KRTAP13-1Q8IUC0 172 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 PPP1R1CQ8WVI7 109 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 PACRGQ96M98 296 aaPredicted RBP2.87□□□□□ -1.95
PTPN4-210ENST00000485247 RNASE7Q9H1E1 156 aaKnown RBP2.87□□□□□ -1.95
PTPN4-210ENST00000485247 XAGE1AQ9HD64 81 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 CYTL1Q9NRR1 136 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 TMEM242Q9NWH2 141 aa2.87□□□□□ -1.95
PTPN4-210ENST00000485247 TRBV30A0A0K0K1B3 111 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 C7orf77A4D0Y5 90 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 F2Z2F3 143 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 PLA2G10O15496 165 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 LYRM1O43325 122 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 FOXA3P55318 350 aaPredicted RBP2.86□□□□□ -1.95
PTPN4-210ENST00000485247 SERF2P84101 59 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 LYZL1Q6UWQ5 148 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 Q8NBF4 154 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 LINC00167Q96N53 147 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 PSMG3Q9BT73 122 aaPredicted RBP2.86□□□□□ -1.95
PTPN4-210ENST00000485247 TNFSF18Q9UNG2 199 aa2.86□□□□□ -1.95
PTPN4-210ENST00000485247 IGHV3OR16-9A0A0B4J2B5 98 aa2.85□□□□□ -1.95
PTPN4-210ENST00000485247 CTXND1A0A1B0GTU2 59 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 123.1 ms