RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 TENM3Q9P273 2699 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 TRAV4A0A0B4J268 109 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 SMAGPQ0VAQ4 97 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 NTM-AS1Q6ZSK4 140 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 X6R8D5 127 aa10.23□□□□□ -0.77
CHD3-211ENST00000481999 H7C2G1 150 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 PRSS2P07478 247 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 SPINK8P0C7L1 97 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 DGAT2L7PQ6IED9 249 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 Q1RN00 199 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 ZFAND6Q6FIF0 208 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 MDFIQ99750 246 aa10.22□□□□□ -0.77
CHD3-211ENST00000481999 TIRAPP58753 221 aa10.21□□□□□ -0.77
CHD3-211ENST00000481999 MIAQ16674 131 aa10.21□□□□□ -0.77
CHD3-211ENST00000481999 IGLV5-45A0A087WSX0 123 aa10.21□□□□□ -0.78
CHD3-211ENST00000481999 M0QXV9 152 aa10.2□□□□□ -0.78
CHD3-211ENST00000481999 ADAMTSL4-AS1Q5T5F5 129 aa10.2□□□□□ -0.78
CHD3-211ENST00000481999 TRGV4A0A0C4DH28 118 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 TRBV10-1A0A0K0K1A3 114 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 SLC25A20O43772 301 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 TIMM17BO60830 172 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 RNF183Q96D59 192 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 CARD19Q96LW7 228 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 OVOL2Q9BRP0 275 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 CDKN2A-AS1Q9UH64 79 aa10.19□□□□□ -0.78
CHD3-211ENST00000481999 TRBV30A0A0K0K1B3 111 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 A8MZ25 164 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 ATXN8Q156A1 80 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 C9JAW5 83 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 RPL36AP83881 106 aaKnown RBP10.18□□□□□ -0.78
CHD3-211ENST00000481999 FHL2Q14192 279 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 ANKRD29Q8N6D5 301 aa10.18□□□□□ -0.78
CHD3-211ENST00000481999 RPL36ALQ969Q0 106 aaKnown RBP10.18□□□□□ -0.78
CHD3-211ENST00000481999 WFDC9Q8NEX5 89 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 NDUFA1O15239 70 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 IGHV4-30-4P0DP06 118 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 IFITM1P13164 125 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 HERVK_113P63121 156 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 DAZ4Q86SG3 579 aaKnown RBP10.17□□□□□ -0.78
CHD3-211ENST00000481999 CDIP1Q9H305 208 aa10.17□□□□□ -0.78
CHD3-211ENST00000481999 DAZ3Q9NR90 486 aaKnown RBP10.17□□□□□ -0.78
CHD3-211ENST00000481999 A0A096LPF7 62 aa10.16□□□□□ -0.78
CHD3-211ENST00000481999 TMEM101Q96IK0 257 aa10.16□□□□□ -0.78
CHD3-211ENST00000481999 FAM222AQ5U5X8 452 aa10.16□□□□□ -0.78
CHD3-211ENST00000481999 CSDC2Q9Y534 153 aaKnown RBP10.16□□□□□ -0.78
CHD3-211ENST00000481999 TRIAP1O43715 76 aa10.15□□□□□ -0.78
CHD3-211ENST00000481999 KRTAP10-11P60412 298 aa10.15□□□□□ -0.78
CHD3-211ENST00000481999 LINC01620Q4KN68 170 aa10.15□□□□□ -0.78
CHD3-211ENST00000481999 FAM19A3Q7Z5A8 133 aa10.15□□□□□ -0.78
CHD3-211ENST00000481999 IGLV5-39A0A0G2JS06 123 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 CIRBPQ14011 172 aaKnown RBP10.14□□□□□ -0.79
CHD3-211ENST00000481999 LINC00242Q5T6M2 205 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 CELA1Q9UNI1 258 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 ICOSQ9Y6W8 199 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 KRTAP21-3Q3LHN1 58 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 MGAM2Q2M2H8 2515 aa10.14□□□□□ -0.79
CHD3-211ENST00000481999 IGHV4-28A0A0C4DH34 117 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 COX6CP09669 75 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 COX6A2Q02221 97 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 C3orf56Q8N813 242 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 LINC01600Q96MT4 127 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 DNHD1Q96M86 4753 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 NPC2P61916 151 aa10.13□□□□□ -0.79
CHD3-211ENST00000481999 RETNQ9HD89 108 aa10.12□□□□□ -0.79
CHD3-211ENST00000481999 TRAV13-1A0A0B4J241 112 aa10.11□□□□□ -0.79
CHD3-211ENST00000481999 TRBV6-4A0A1B0GX49 114 aa10.11□□□□□ -0.79
CHD3-211ENST00000481999 TMEM262E9PQX1 116 aa10.11□□□□□ -0.79
CHD3-211ENST00000481999 TRBV10-2A0A0K0K1G8 114 aa10.11□□□□□ -0.79
CHD3-211ENST00000481999 Q9H8V8 135 aa10.11□□□□□ -0.79
CHD3-211ENST00000481999 IGKV3OR2-268A0A0C4DH90 116 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 SMIM1B2RUZ4 78 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 CDC42SE2Q9NRR3 84 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 GAGE6Q13070 117 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 DAND5Q8N907 189 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 COPS9Q8WXC6 57 aa10.1□□□□□ -0.79
CHD3-211ENST00000481999 GYPEP15421 78 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 RPL13AP40429 203 aaKnown RBP10.09□□□□□ -0.79
CHD3-211ENST00000481999 APOC4P55056 127 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 KIR2DL5BQ8NHK3 375 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 XGP55808 180 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 LINC00612Q8N6U2 182 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 Q8NAQ8 132 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 LINC00308Q8TCZ7 52 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 NTN5Q8WTR8 489 aaPredicted RBP10.09□□□□□ -0.79
CHD3-211ENST00000481999 TMEM243Q9BU79 118 aa10.09□□□□□ -0.79
CHD3-211ENST00000481999 DNAH3Q8TD57 4116 aa10.08□□□□□ -0.8
CHD3-211ENST00000481999 UBE2L6O14933 153 aa10.08□□□□□ -0.8
CHD3-211ENST00000481999 PRB2P02812 416 aaPredicted RBP10.08□□□□□ -0.8
CHD3-211ENST00000481999 MT-ATP8P03928 68 aa10.08□□□□□ -0.8
CHD3-211ENST00000481999 IGLV4-60A0A075B6I1 120 aa10.08□□□□□ -0.8
CHD3-211ENST00000481999 WIPF1O43516 503 aa10.08□□□□□ -0.8
CHD3-211ENST00000481999 A0A1B0GV72 72 aa10.07□□□□□ -0.8
CHD3-211ENST00000481999 HTN3P15516 51 aa10.07□□□□□ -0.8
CHD3-211ENST00000481999 F5H768 121 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 H3BT86 120 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 H7C423 109 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 LST1O00453 97 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 C2orf82Q6UX34 121 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 Q8N3U1 123 aa10.06□□□□□ -0.8
CHD3-211ENST00000481999 ZNF625Q96I27 306 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms