RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 Q6ZRP5 223 aa14.15□□□□□ -0.14
C9orf3-216ENST00000478603 SPANXA1Q9NS26 97 aa14.15□□□□□ -0.14
C9orf3-216ENST00000478603 RPL18AQ02543 176 aaKnown RBP14.14□□□□□ -0.15
C9orf3-216ENST00000478603 ODF1Q14990 250 aa14.14□□□□□ -0.15
C9orf3-216ENST00000478603 SPINK6Q6UWN8 80 aa14.14□□□□□ -0.15
C9orf3-216ENST00000478603 MRPS36P82909 103 aaKnown RBP14.12□□□□□ -0.15
C9orf3-216ENST00000478603 ORAOV1Q8WV07 137 aa14.12□□□□□ -0.15
C9orf3-216ENST00000478603 IGHV3OR16-9A0A0B4J2B5 98 aa14.11□□□□□ -0.15
C9orf3-216ENST00000478603 IFITM10A6NMD0 228 aa14.11□□□□□ -0.15
C9orf3-216ENST00000478603 PPBPP02775 128 aa14.11□□□□□ -0.15
C9orf3-216ENST00000478603 SRSF9Q13242 221 aaKnown RBP eCLIP14.11□□□□□ -0.15
C9orf3-216ENST00000478603 C9orf116Q5BN46 136 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-216ENST00000478603 ORMDL3Q8N138 153 aa14.11□□□□□ -0.15
C9orf3-216ENST00000478603 OR10D4PQ8NGN7 298 aa14.11□□□□□ -0.15
C9orf3-216ENST00000478603 TMEM136Q6ZRR5 245 aa14.1□□□□□ -0.15
C9orf3-216ENST00000478603 ATP5L2Q7Z4Y8 100 aa14.09□□□□□ -0.15
C9orf3-216ENST00000478603 PRELID3AQ96N28 172 aa14.09□□□□□ -0.15
C9orf3-216ENST00000478603 RNF151Q2KHN1 245 aa14.08□□□□□ -0.16
C9orf3-216ENST00000478603 REG3GQ6UW15 175 aa14.08□□□□□ -0.16
C9orf3-216ENST00000478603 RAB5AP20339 215 aa14.07□□□□□ -0.16
C9orf3-216ENST00000478603 C10orf25Q5T742 122 aa14.07□□□□□ -0.16
C9orf3-216ENST00000478603 PHF5AQ7RTV0 110 aaKnown RBP14.07□□□□□ -0.16
C9orf3-216ENST00000478603 IFI27P40305 119 aaPredicted RBP14.06□□□□□ -0.16
C9orf3-216ENST00000478603 MRPL35Q9NZE8 188 aaKnown RBP14.06□□□□□ -0.16
C9orf3-216ENST00000478603 LOC389332A0A1B0GUA5 103 aa14.05□□□□□ -0.16
C9orf3-216ENST00000478603 NDUFA1O15239 70 aa14.05□□□□□ -0.16
C9orf3-216ENST00000478603 KRTAP10-8P60410 259 aa14.05□□□□□ -0.16
C9orf3-216ENST00000478603 PSORS1C2Q9UIG4 136 aa14.05□□□□□ -0.16
C9orf3-216ENST00000478603 IGLV4-3A0A075B6K6 122 aa14.04□□□□□ -0.16
C9orf3-216ENST00000478603 UNQ6190/PRO20217Q6UXQ8 127 aa14.04□□□□□ -0.16
C9orf3-216ENST00000478603 TGIF2-C20orf24A0A0A6YYL0 155 aa14.03□□□□□ -0.16
C9orf3-216ENST00000478603 MT-ND6P03923 174 aa14.03□□□□□ -0.16
C9orf3-216ENST00000478603 F8WDY8 70 aa14.02□□□□□ -0.17
C9orf3-216ENST00000478603 LINC00242Q5T6M2 205 aa14.02□□□□□ -0.17
C9orf3-216ENST00000478603 IMMP2LQ96T52 175 aa14.02□□□□□ -0.17
C9orf3-216ENST00000478603 C6orf48Q9UBA6 75 aa14.02□□□□□ -0.17
C9orf3-216ENST00000478603 PYGO1Q9Y3Y4 419 aa14.02□□□□□ -0.17
C9orf3-216ENST00000478603 FAM168BA1KXE4 195 aa14.01□□□□□ -0.17
C9orf3-216ENST00000478603 MAP1LC3AQ9H492 121 aa14.01□□□□□ -0.17
C9orf3-216ENST00000478603 A0A087WZ39 114 aa14□□□□□ -0.17
C9orf3-216ENST00000478603 PRSS47A8MTI9 375 aa14□□□□□ -0.17
C9orf3-216ENST00000478603 C1orf137Q5JT78 98 aa14□□□□□ -0.17
C9orf3-216ENST00000478603 TMEM141Q96I45 108 aa14□□□□□ -0.17
C9orf3-216ENST00000478603 PNRC1Q12796 327 aaPredicted RBP13.99□□□□□ -0.17
C9orf3-216ENST00000478603 KIAA0087Q14695 138 aa13.99□□□□□ -0.17
C9orf3-216ENST00000478603 ZC2HC1BQ5TFG8 222 aa13.99□□□□□ -0.17
C9orf3-216ENST00000478603 LAMTOR2Q9Y2Q5 125 aa13.99□□□□□ -0.17
C9orf3-216ENST00000478603 MT-ND4LP03901 98 aa13.98□□□□□ -0.17
C9orf3-216ENST00000478603 TLX1NBP0CAT3 122 aa13.98□□□□□ -0.17
C9orf3-216ENST00000478603 GAGE2EQ4V326 116 aa13.98□□□□□ -0.17
C9orf3-216ENST00000478603 ANAPC16Q96DE5 110 aa13.98□□□□□ -0.17
C9orf3-216ENST00000478603 GAGE2DQ9UEU5 116 aa13.98□□□□□ -0.17
C9orf3-216ENST00000478603 LRP2P98164 4655 aa13.97□□□□□ -0.17
C9orf3-216ENST00000478603 TEX43Q6ZNM6 134 aa13.97□□□□□ -0.17
C9orf3-216ENST00000478603 Q8N8P6 123 aa13.97□□□□□ -0.17
C9orf3-216ENST00000478603 UBE2D1P51668 147 aa13.96□□□□□ -0.17
C9orf3-216ENST00000478603 C2orf82Q6UX34 121 aa13.96□□□□□ -0.17
C9orf3-216ENST00000478603 C2orf66Q6UXQ4 117 aa13.96□□□□□ -0.17
C9orf3-216ENST00000478603 FAM19A5Q7Z5A7 132 aaPredicted RBP13.96□□□□□ -0.17
C9orf3-216ENST00000478603 KRTAP11-1Q8IUC1 163 aa13.96□□□□□ -0.17
C9orf3-216ENST00000478603 CYSLTR1Q9Y271 337 aa13.95□□□□□ -0.18
C9orf3-216ENST00000478603 LINC00173Q6ZV60 143 aa13.94□□□□□ -0.18
C9orf3-216ENST00000478603 C2orf88Q9BSF0 95 aa13.94□□□□□ -0.18
C9orf3-216ENST00000478603 RAB14P61106 215 aa13.93□□□□□ -0.18
C9orf3-216ENST00000478603 KRTAP7-1Q8IUC3 87 aa13.93□□□□□ -0.18
C9orf3-216ENST00000478603 Q6ZN92 141 aa13.92□□□□□ -0.18
C9orf3-216ENST00000478603 AMELXQ99217 191 aa13.92□□□□□ -0.18
C9orf3-216ENST00000478603 IGLV7-43P04211 117 aa13.91□□□□□ -0.18
C9orf3-216ENST00000478603 ORMDL2Q53FV1 153 aa13.91□□□□□ -0.18
C9orf3-216ENST00000478603 VCX2Q9H322 139 aa13.91□□□□□ -0.18
C9orf3-216ENST00000478603 TRBV30A0A0K0K1B3 111 aa13.9□□□□□ -0.18
C9orf3-216ENST00000478603 IGIPA6NJ69 53 aa13.89□□□□□ -0.19
C9orf3-216ENST00000478603 LINC01561Q8N1V8 128 aa13.89□□□□□ -0.19
C9orf3-216ENST00000478603 PACRGQ96M98 296 aaPredicted RBP13.89□□□□□ -0.19
C9orf3-216ENST00000478603 CTDSP1Q9GZU7 261 aa13.89□□□□□ -0.19
C9orf3-216ENST00000478603 NDUFC2-KCTD14E9PQ53 114 aa13.87□□□□□ -0.19
C9orf3-216ENST00000478603 M0QXV9 152 aa13.87□□□□□ -0.19
C9orf3-216ENST00000478603 C9orf129Q5T035 196 aaKnown RBP13.87□□□□□ -0.19
C9orf3-216ENST00000478603 TOMM7Q9P0U1 55 aa13.87□□□□□ -0.19
C9orf3-216ENST00000478603 KIAA1644Q3SXP7 199 aa13.86□□□□□ -0.19
C9orf3-216ENST00000478603 DIRC1Q969H9 104 aa13.86□□□□□ -0.19
C9orf3-216ENST00000478603 NXT2Q9NPJ8 142 aaKnown RBP13.86□□□□□ -0.19
C9orf3-216ENST00000478603 K7EMI3 77 aa13.85□□□□□ -0.19
C9orf3-216ENST00000478603 PRSS2P07478 247 aa13.85□□□□□ -0.19
C9orf3-216ENST00000478603 NPSP0C0P6 89 aa13.84□□□□□ -0.19
C9orf3-216ENST00000478603 UBE2BP63146 152 aa13.84□□□□□ -0.19
C9orf3-216ENST00000478603 PRR26Q8N8Z3 221 aa13.84□□□□□ -0.19
C9orf3-216ENST00000478603 ADCYAP1P18509 176 aa13.83□□□□□ -0.2
C9orf3-216ENST00000478603 CLLU1Q5K131 121 aa13.83□□□□□ -0.2
C9orf3-216ENST00000478603 FAM19A3Q7Z5A8 133 aa13.83□□□□□ -0.2
C9orf3-216ENST00000478603 H0Y9J4 135 aa13.82□□□□□ -0.2
C9orf3-216ENST00000478603 CKS1BP61024 79 aa13.82□□□□□ -0.2
C9orf3-216ENST00000478603 C6orf226Q5I0X4 101 aa13.82□□□□□ -0.2
C9orf3-216ENST00000478603 LINC00469Q8N7U9 141 aa13.82□□□□□ -0.2
C9orf3-216ENST00000478603 CDKN2A-AS1Q9UH64 79 aa13.82□□□□□ -0.2
C9orf3-216ENST00000478603 Q8IZM0 81 aa13.81□□□□□ -0.2
C9orf3-216ENST00000478603 TOMM6Q96B49 74 aa13.81□□□□□ -0.2
C9orf3-216ENST00000478603 ALKBH7Q9BT30 221 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-216ENST00000478603 HERVK_113P63121 156 aa13.8□□□□□ -0.2
C9orf3-216ENST00000478603 TIMM17AQ99595 171 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms