RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 BRI3O95415 125 aa13.89□□□□□ -0.19
CCDC88B-204ENST00000463837 CDC42SE2Q9NRR3 84 aa13.89□□□□□ -0.19
CCDC88B-204ENST00000463837 B9D2Q9BPU9 175 aa13.89□□□□□ -0.19
CCDC88B-204ENST00000463837 LINC00959A0A1B0GUT2 108 aa13.88□□□□□ -0.19
CCDC88B-204ENST00000463837 HIGD2AQ9BW72 106 aa13.88□□□□□ -0.19
CCDC88B-204ENST00000463837 LINC01546A6NGU7 62 aa13.87□□□□□ -0.19
CCDC88B-204ENST00000463837 LY6G6DO95868 133 aa13.87□□□□□ -0.19
CCDC88B-204ENST00000463837 CCKP06307 115 aa13.87□□□□□ -0.19
CCDC88B-204ENST00000463837 TSPEAR-AS2P59090 65 aa13.87□□□□□ -0.19
CCDC88B-204ENST00000463837 Q8IZM0 81 aa13.87□□□□□ -0.19
CCDC88B-204ENST00000463837 IGKV2-24A0A0C4DH68 120 aa13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 RPL28P46779 137 aaKnown RBP13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 EP400Q96L91 3159 aa13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 LINC00242Q5T6M2 205 aa13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 ABCA2Q9BZC7 2435 aa13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 AMELXQ99217 191 aa13.86□□□□□ -0.19
CCDC88B-204ENST00000463837 Q6ZQY7 126 aa13.85□□□□□ -0.19
CCDC88B-204ENST00000463837 LINC00526Q96FQ7 95 aa13.85□□□□□ -0.19
CCDC88B-204ENST00000463837 V9GYY9 64 aa13.85□□□□□ -0.19
CCDC88B-204ENST00000463837 LINC00694P0DN24 101 aa13.85□□□□□ -0.19
CCDC88B-204ENST00000463837 DSCAMO60469 2012 aa13.85□□□□□ -0.19
CCDC88B-204ENST00000463837 C3orf84H3BNL1 204 aa13.84□□□□□ -0.19
CCDC88B-204ENST00000463837 DOPEY1Q5JWR5 2465 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 C1orf158Q8N1D5 194 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 A0A096LNI7 61 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 LOC100131303A0A0U1RQF7 123 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 M0R378 163 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 IGKV4-1P06312 121 aa13.83□□□□□ -0.2
CCDC88B-204ENST00000463837 SMIM1B2RUZ4 78 aa13.82□□□□□ -0.2
CCDC88B-204ENST00000463837 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.82□□□□□ -0.2
CCDC88B-204ENST00000463837 CHCHD7Q9BUK0 85 aa13.82□□□□□ -0.2
CCDC88B-204ENST00000463837 FAM19A3Q7Z5A8 133 aa13.82□□□□□ -0.2
CCDC88B-204ENST00000463837 CSDC2Q9Y534 153 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-204ENST00000463837 IGF2RP11717 2491 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 LINC01006Q8NI28 216 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 ZNF580Q9UK33 172 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 KIR2DL5BQ8NHK3 375 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 DHRS4-AS1Q9P1J3 65 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 TRAV10A0A0B4J240 114 aa13.8□□□□□ -0.2
CCDC88B-204ENST00000463837 BBC3Q96PG8 261 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-204ENST00000463837 SYCNQ0VAF6 134 aa13.78□□□□□ -0.2
CCDC88B-204ENST00000463837 PIEZO2Q9H5I5 2752 aa13.78□□□□□ -0.2
CCDC88B-204ENST00000463837 WFDC10BQ8IUB3 73 aa13.78□□□□□ -0.2
CCDC88B-204ENST00000463837 TRAV7A0A075B6U4 112 aa13.77□□□□□ -0.2
CCDC88B-204ENST00000463837 LELP1Q5T871 98 aa13.77□□□□□ -0.2
CCDC88B-204ENST00000463837 LINC00482Q8N8I6 264 aa13.77□□□□□ -0.2
CCDC88B-204ENST00000463837 FAM19A1Q7Z5A9 133 aa13.77□□□□□ -0.21
CCDC88B-204ENST00000463837 WDR87Q6ZQQ6 2873 aa13.77□□□□□ -0.21
CCDC88B-204ENST00000463837 ADAMTSL4-AS1Q5T5F5 129 aa13.76□□□□□ -0.21
CCDC88B-204ENST00000463837 C18orf65Q6ZTR6 163 aa13.75□□□□□ -0.21
CCDC88B-204ENST00000463837 MYO9AB2RTY4 2548 aa13.75□□□□□ -0.21
CCDC88B-204ENST00000463837 SMIM26A0A096LP01 95 aa13.75□□□□□ -0.21
CCDC88B-204ENST00000463837 NTM-AS1Q6ZSK4 140 aa13.75□□□□□ -0.21
CCDC88B-204ENST00000463837 EXPH5Q8NEV8 1989 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 ZNF73O43830 326 aaPredicted RBP13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 IGKV2-28A0A075B6P5 120 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 IGKV2D-28P01615 120 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 PLA2G2AP14555 144 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 A0A087WVE0 104 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 EDN2P20800 178 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 A0A087WZ39 114 aa13.74□□□□□ -0.21
CCDC88B-204ENST00000463837 MRPL55Q7Z7F7 128 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 WFDC10AQ9H1F0 79 aa13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 Q8N814 137 aa13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 CDIP1Q9H305 208 aa13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 PRR4Q16378 134 aa13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 SERP1Q9Y6X1 66 aa13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 FAM19A5Q7Z5A7 132 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-204ENST00000463837 HRCT1Q6UXD1 115 aa13.71□□□□□ -0.21
CCDC88B-204ENST00000463837 COX6A2Q02221 97 aa13.71□□□□□ -0.22
CCDC88B-204ENST00000463837 BEAN1Q3B7T3 259 aa13.7□□□□□ -0.22
CCDC88B-204ENST00000463837 TRBV7-7A0A0K0K1E9 115 aa13.69□□□□□ -0.22
CCDC88B-204ENST00000463837 WFDC13Q8IUB5 93 aa13.69□□□□□ -0.22
CCDC88B-204ENST00000463837 C7orf33Q8WU49 177 aa13.68□□□□□ -0.22
CCDC88B-204ENST00000463837 KIF25-AS1Q9Y6Z4 181 aa13.67□□□□□ -0.22
CCDC88B-204ENST00000463837 A0A087WYN8 130 aa13.67□□□□□ -0.22
CCDC88B-204ENST00000463837 ODF3L2Q3SX64 289 aa13.67□□□□□ -0.22
CCDC88B-204ENST00000463837 A0A0J9YWU9 116 aa13.67□□□□□ -0.22
CCDC88B-204ENST00000463837 SEC61GP60059 68 aa13.67□□□□□ -0.22
CCDC88B-204ENST00000463837 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.66□□□□□ -0.22
CCDC88B-204ENST00000463837 CYSRT1A8MQ03 144 aa13.64□□□□□ -0.23
CCDC88B-204ENST00000463837 KPRPQ5T749 579 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-204ENST00000463837 LINC01561Q8N1V8 128 aa13.64□□□□□ -0.23
CCDC88B-204ENST00000463837 FAM30AQ9NZY2 134 aa13.64□□□□□ -0.23
CCDC88B-204ENST00000463837 PRRC2AP48634 2157 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-204ENST00000463837 TLN1Q9Y490 2541 aaKnown RBP13.62□□□□□ -0.23
CCDC88B-204ENST00000463837 LRCOL1A6NCL2 159 aa13.62□□□□□ -0.23
CCDC88B-204ENST00000463837 C1orf195Q5TG92 126 aa13.62□□□□□ -0.23
CCDC88B-204ENST00000463837 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 EGFEM1PQ0D2K5 195 aa13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 CDSNQ15517 529 aa13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 PRR3P79522 188 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 CELA1Q9UNI1 258 aa13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 PRO0461Q9UI25 63 aa13.61□□□□□ -0.23
CCDC88B-204ENST00000463837 AVPP01185 164 aa13.6□□□□□ -0.23
CCDC88B-204ENST00000463837 PPDPFQ9H3Y8 114 aa13.6□□□□□ -0.23
CCDC88B-204ENST00000463837 RPL37AP8A6NKH3 93 aa13.6□□□□□ -0.23
CCDC88B-204ENST00000463837 C9orf116Q5BN46 136 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-204ENST00000463837 UNQ6190/PRO20217Q6UXQ8 127 aa13.59□□□□□ -0.23
CCDC88B-204ENST00000463837 CASC2Q6XLA1 102 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 451 ms