RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 UPK3BQ9BT76 320 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 CSDC2Q9Y534 153 aaKnown RBP7.42□□□□□ -1.22
SCN9A-205ENST00000454569 IGKV3OR2-268A0A0C4DH90 116 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 SIVA1O15304 175 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 TCTAP57738 103 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 MRPS36P82909 103 aaKnown RBP7.42□□□□□ -1.22
SCN9A-205ENST00000454569 LINC00269Q8N2A0 174 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 OR5A1Q8NGJ0 315 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 KRTAP1-5Q9BYS1 174 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 VCX2Q9H322 139 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 CST9LQ9H4G1 147 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 Q9H8V8 135 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 KLK12Q9UKR0 248 aa7.42□□□□□ -1.22
SCN9A-205ENST00000454569 DNAH6Q9C0G6 4158 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 C3orf84H3BNL1 204 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 ANGP03950 147 aaKnown RBP7.41□□□□□ -1.22
SCN9A-205ENST00000454569 PLA2G1BP04054 148 aaKnown RBP7.41□□□□□ -1.22
SCN9A-205ENST00000454569 DNAH10OSP0CZ25 163 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 LINC01556Q5JQF7 62 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 ENHOQ6UWT2 76 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 UBE2DNLQ8IWF7 75 aa7.41□□□□□ -1.22
SCN9A-205ENST00000454569 SACSQ9NZJ4 4579 aa7.4□□□□□ -1.22
SCN9A-205ENST00000454569 ZNF25P17030 456 aaPredicted RBP7.4□□□□□ -1.22
SCN9A-205ENST00000454569 TMEM101Q96IK0 257 aa7.4□□□□□ -1.22
SCN9A-205ENST00000454569 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.4□□□□□ -1.22
SCN9A-205ENST00000454569 IGLV4-69A0A075B6H9 119 aa7.39□□□□□ -1.23
SCN9A-205ENST00000454569 A0A0J9YXV3 536 aa7.39□□□□□ -1.23
SCN9A-205ENST00000454569 DDTP30046 118 aa7.39□□□□□ -1.23
SCN9A-205ENST00000454569 COX6A2Q02221 97 aa7.39□□□□□ -1.23
SCN9A-205ENST00000454569 STPG4Q8N801 248 aa7.39□□□□□ -1.23
SCN9A-205ENST00000454569 TRAV13-1A0A0B4J241 112 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 DLEU1O43261 78 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 IGLC3P0DOY3 106 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 MIEN1Q9BRT3 115 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 CHAC1Q9BUX1 264 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 PRR34Q9NV39 138 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 UQCR10Q9UDW1 63 aa7.38□□□□□ -1.23
SCN9A-205ENST00000454569 IGLV10-54A0A075B6I4 117 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 LINC00959A0A1B0GUT2 108 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 C11orf86A6NJI1 115 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 UBE2D1P51668 147 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 REG3AQ06141 175 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 LINC00242Q5T6M2 205 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 UBE2WQ96B02 151 aa7.37□□□□□ -1.23
SCN9A-205ENST00000454569 KMT2CQ8NEZ4 4911 aaKnown RBP7.36□□□□□ -1.23
SCN9A-205ENST00000454569 DNAH2Q9P225 4427 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 TMEM238C9JI98 176 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 LY6G6CO95867 125 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 NMUP48645 174 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 TMEM170BQ5T4T1 132 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 NFE4Q86UQ8 179 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 LINC00476Q8WZB0 136 aa7.36□□□□□ -1.23
SCN9A-205ENST00000454569 M0R2N4 97 aa7.35□□□□□ -1.23
SCN9A-205ENST00000454569 COX8AP10176 69 aa7.35□□□□□ -1.23
SCN9A-205ENST00000454569 HERVK_113P61574 105 aa7.35□□□□□ -1.23
SCN9A-205ENST00000454569 KRTAP26-1Q6PEX3 210 aa7.35□□□□□ -1.23
SCN9A-205ENST00000454569 SLC25A34Q6PIV7 304 aa7.35□□□□□ -1.23
SCN9A-205ENST00000454569 RYR2Q92736 4967 aa7.34□□□□□ -1.23
SCN9A-205ENST00000454569 IGKV2D-26A0A0A0MRZ7 120 aa7.34□□□□□ -1.23
SCN9A-205ENST00000454569 IBA57-AS1B1ANH7 110 aa7.34□□□□□ -1.23
SCN9A-205ENST00000454569 CCL25O15444 150 aa7.34□□□□□ -1.23
SCN9A-205ENST00000454569 HNRNPA3P51991 378 aaKnown RBP7.34□□□□□ -1.23
SCN9A-205ENST00000454569 Q9HAA7 133 aa7.34□□□□□ -1.23
SCN9A-205ENST00000454569 NBDYA0A0U1RRE5 68 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 TINCRA0A1B0GVN0 87 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 ZNF22P17026 224 aaPredicted RBP7.33□□□□□ -1.24
SCN9A-205ENST00000454569 FAM19A3Q7Z5A8 133 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 GEMIN7Q9H840 131 aaKnown RBP7.33□□□□□ -1.24
SCN9A-205ENST00000454569 TP73-AS1Q9UF72 201 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 FRAS1Q86XX4 4008 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 E9PLD3 99 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 XCL1P47992 114 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 SEC11AP67812 179 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 MAPKAPK5-AS1Q8N8E1 139 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 CHCHD10Q8WYQ3 142 aaPredicted RBP7.33□□□□□ -1.24
SCN9A-205ENST00000454569 CDKN2A-AS1Q9UH64 79 aa7.33□□□□□ -1.24
SCN9A-205ENST00000454569 PCP2Q8IVA1 136 aa7.32□□□□□ -1.24
SCN9A-205ENST00000454569 BOD1L2Q8IYS8 172 aa7.32□□□□□ -1.24
SCN9A-205ENST00000454569 IGHV3OR16-9A0A0B4J2B5 98 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 TMEM223A0PJW6 202 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 GAGE12HA6NDE8 117 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 CRPP02741 224 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 HERVK_113P63121 156 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 FOXI1Q12951 378 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 SS18Q15532 418 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 Q6ZR54 194 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 C5orf38Q86SI9 138 aa7.31□□□□□ -1.24
SCN9A-205ENST00000454569 MALP21145 153 aa7.3□□□□□ -1.24
SCN9A-205ENST00000454569 MIAQ16674 131 aa7.3□□□□□ -1.24
SCN9A-205ENST00000454569 TTTY13Q9BZ97 58 aa7.3□□□□□ -1.24
SCN9A-205ENST00000454569 IGHV3-64A0A075B6Q5 118 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 IGKV2D-24A0A075B6R9 120 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 IGLV5-45A0A087WSX0 123 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 TRAV8-3A0A0A6YYJ7 113 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 H3BRM9 83 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 SPINK8P0C7L1 97 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 CD164L2Q6UWJ8 174 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 C10orf126Q8N4M7 172 aa7.29□□□□□ -1.24
SCN9A-205ENST00000454569 DNAH17Q9UFH2 4485 aa7.28□□□□□ -1.24
SCN9A-205ENST00000454569 TRAV8-4A0A0B4J246 113 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms