RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ORMDL3Q8N138 153 aa12.9□□□□□ -0.34
SDC1-205ENST00000447124 PRELID3AQ96N28 172 aa12.9□□□□□ -0.34
SDC1-205ENST00000447124 PLA2G2DQ9UNK4 145 aa12.9□□□□□ -0.34
SDC1-205ENST00000447124 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.89□□□□□ -0.35
SDC1-205ENST00000447124 A0A0J9YXV3 536 aa12.88□□□□□ -0.35
SDC1-205ENST00000447124 APOMO95445 188 aa12.88□□□□□ -0.35
SDC1-205ENST00000447124 SPAG11BQ08648 103 aa12.88□□□□□ -0.35
SDC1-205ENST00000447124 PRSS47A8MTI9 375 aa12.87□□□□□ -0.35
SDC1-205ENST00000447124 SRSF9Q13242 221 aaKnown RBP eCLIP12.86□□□□□ -0.35
SDC1-205ENST00000447124 LOC389332A0A1B0GUA5 103 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 RAB5AP20339 215 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 RNF151Q2KHN1 245 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 OR10D4PQ8NGN7 298 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 ORAOV1Q8WV07 137 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 LINC01600Q96MT4 127 aa12.85□□□□□ -0.35
SDC1-205ENST00000447124 IFITM10A6NMD0 228 aa12.84□□□□□ -0.35
SDC1-205ENST00000447124 PNRC1Q12796 327 aaPredicted RBP12.84□□□□□ -0.35
SDC1-205ENST00000447124 C9orf116Q5BN46 136 aaPredicted RBP12.84□□□□□ -0.35
SDC1-205ENST00000447124 C10orf25Q5T742 122 aa12.84□□□□□ -0.35
SDC1-205ENST00000447124 ANAPC16Q96DE5 110 aa12.84□□□□□ -0.35
SDC1-205ENST00000447124 PYGO1Q9Y3Y4 419 aa12.84□□□□□ -0.35
SDC1-205ENST00000447124 IGLV4-3A0A075B6K6 122 aa12.83□□□□□ -0.36
SDC1-205ENST00000447124 MT-ND4LP03901 98 aa12.83□□□□□ -0.36
SDC1-205ENST00000447124 Q6ZRP5 223 aa12.83□□□□□ -0.36
SDC1-205ENST00000447124 LINC00242Q5T6M2 205 aa12.82□□□□□ -0.36
SDC1-205ENST00000447124 SPINK6Q6UWN8 80 aa12.82□□□□□ -0.36
SDC1-205ENST00000447124 UNQ6190/PRO20217Q6UXQ8 127 aa12.82□□□□□ -0.36
SDC1-205ENST00000447124 MRPL35Q9NZE8 188 aaKnown RBP12.82□□□□□ -0.36
SDC1-205ENST00000447124 IFI27P40305 119 aaPredicted RBP12.81□□□□□ -0.36
SDC1-205ENST00000447124 RAB14P61106 215 aa12.81□□□□□ -0.36
SDC1-205ENST00000447124 RPL18AQ02543 176 aaKnown RBP12.81□□□□□ -0.36
SDC1-205ENST00000447124 LAMTOR2Q9Y2Q5 125 aa12.81□□□□□ -0.36
SDC1-205ENST00000447124 KIAA0087Q14695 138 aa12.8□□□□□ -0.36
SDC1-205ENST00000447124 ODF1Q14990 250 aa12.8□□□□□ -0.36
SDC1-205ENST00000447124 ZC2HC1BQ5TFG8 222 aa12.8□□□□□ -0.36
SDC1-205ENST00000447124 Q8N8P6 123 aa12.8□□□□□ -0.36
SDC1-205ENST00000447124 MAP1LC3AQ9H492 121 aa12.8□□□□□ -0.36
SDC1-205ENST00000447124 A0A087WZ39 114 aa12.79□□□□□ -0.36
SDC1-205ENST00000447124 F8WDY8 70 aa12.79□□□□□ -0.36
SDC1-205ENST00000447124 PHF5AQ7RTV0 110 aaKnown RBP12.79□□□□□ -0.36
SDC1-205ENST00000447124 C6orf48Q9UBA6 75 aa12.79□□□□□ -0.36
SDC1-205ENST00000447124 NDUFA1O15239 70 aa12.78□□□□□ -0.36
SDC1-205ENST00000447124 KRTAP10-8P60410 259 aa12.78□□□□□ -0.36
SDC1-205ENST00000447124 TMEM141Q96I45 108 aa12.78□□□□□ -0.36
SDC1-205ENST00000447124 TGIF2-C20orf24A0A0A6YYL0 155 aa12.77□□□□□ -0.37
SDC1-205ENST00000447124 CLLU1Q5K131 121 aa12.77□□□□□ -0.37
SDC1-205ENST00000447124 PSORS1C2Q9UIG4 136 aa12.77□□□□□ -0.37
SDC1-205ENST00000447124 UBE2D1P51668 147 aa12.76□□□□□ -0.37
SDC1-205ENST00000447124 C2orf66Q6UXQ4 117 aa12.76□□□□□ -0.37
SDC1-205ENST00000447124 IMMP2LQ96T52 175 aa12.76□□□□□ -0.37
SDC1-205ENST00000447124 FAM168BA1KXE4 195 aa12.75□□□□□ -0.37
SDC1-205ENST00000447124 TLX1NBP0CAT3 122 aa12.75□□□□□ -0.37
SDC1-205ENST00000447124 LINC00173Q6ZV60 143 aa12.75□□□□□ -0.37
SDC1-205ENST00000447124 AMELXQ99217 191 aa12.75□□□□□ -0.37
SDC1-205ENST00000447124 ADCYAP1P18509 176 aa12.74□□□□□ -0.37
SDC1-205ENST00000447124 TEX43Q6ZNM6 134 aa12.74□□□□□ -0.37
SDC1-205ENST00000447124 CYSLTR1Q9Y271 337 aa12.74□□□□□ -0.37
SDC1-205ENST00000447124 IGIPA6NJ69 53 aa12.73□□□□□ -0.37
SDC1-205ENST00000447124 REG3GQ6UW15 175 aa12.73□□□□□ -0.37
SDC1-205ENST00000447124 KRTAP11-1Q8IUC1 163 aa12.73□□□□□ -0.37
SDC1-205ENST00000447124 KRTAP7-1Q8IUC3 87 aa12.73□□□□□ -0.37
SDC1-205ENST00000447124 LRP2P98164 4655 aa12.72□□□□□ -0.37
SDC1-205ENST00000447124 IFITM2Q01629 132 aa12.72□□□□□ -0.37
SDC1-205ENST00000447124 C2orf82Q6UX34 121 aa12.72□□□□□ -0.37
SDC1-205ENST00000447124 CTDSP1Q9GZU7 261 aa12.72□□□□□ -0.37
SDC1-205ENST00000447124 MT-ND6P03923 174 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 KIAA1644Q3SXP7 199 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 GAGE2EQ4V326 116 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 ORMDL2Q53FV1 153 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 LINC01561Q8N1V8 128 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 VCX2Q9H322 139 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 GAGE2DQ9UEU5 116 aa12.71□□□□□ -0.37
SDC1-205ENST00000447124 TMEM218A2RU14 115 aa12.69□□□□□ -0.38
SDC1-205ENST00000447124 C1orf137Q5JT78 98 aa12.69□□□□□ -0.38
SDC1-205ENST00000447124 C2orf88Q9BSF0 95 aa12.69□□□□□ -0.38
SDC1-205ENST00000447124 NXT2Q9NPJ8 142 aaKnown RBP12.69□□□□□ -0.38
SDC1-205ENST00000447124 K7EMI3 77 aa12.68□□□□□ -0.38
SDC1-205ENST00000447124 FAM19A3Q7Z5A8 133 aa12.68□□□□□ -0.38
SDC1-205ENST00000447124 TRBV30A0A0K0K1B3 111 aa12.67□□□□□ -0.38
SDC1-205ENST00000447124 NPSP0C0P6 89 aa12.67□□□□□ -0.38
SDC1-205ENST00000447124 Q6ZN92 141 aa12.67□□□□□ -0.38
SDC1-205ENST00000447124 UQCC3Q6UW78 93 aa12.66□□□□□ -0.38
SDC1-205ENST00000447124 FAM19A5Q7Z5A7 132 aaPredicted RBP12.66□□□□□ -0.38
SDC1-205ENST00000447124 C9orf129Q5T035 196 aaKnown RBP12.65□□□□□ -0.38
SDC1-205ENST00000447124 IGLV7-43P04211 117 aa12.64□□□□□ -0.39
SDC1-205ENST00000447124 TOMM6Q96B49 74 aa12.64□□□□□ -0.39
SDC1-205ENST00000447124 NDUFC2-KCTD14E9PQ53 114 aa12.63□□□□□ -0.39
SDC1-205ENST00000447124 PACRGQ96M98 296 aaPredicted RBP12.63□□□□□ -0.39
SDC1-205ENST00000447124 TIMM17AQ99595 171 aa12.63□□□□□ -0.39
SDC1-205ENST00000447124 TOMM7Q9P0U1 55 aa12.63□□□□□ -0.39
SDC1-205ENST00000447124 CDKN2A-AS1Q9UH64 79 aa12.63□□□□□ -0.39
SDC1-205ENST00000447124 TRAV9-1A0A075B6T8 112 aa12.61□□□□□ -0.39
SDC1-205ENST00000447124 PRSS2P07478 247 aa12.6□□□□□ -0.39
SDC1-205ENST00000447124 C6orf226Q5I0X4 101 aa12.6□□□□□ -0.39
SDC1-205ENST00000447124 Q8IZM0 81 aa12.6□□□□□ -0.39
SDC1-205ENST00000447124 SEC11CQ9BY50 192 aa12.6□□□□□ -0.39
SDC1-205ENST00000447124 G0S2P27469 103 aa12.59□□□□□ -0.39
SDC1-205ENST00000447124 HERVK_113P63121 156 aa12.59□□□□□ -0.39
SDC1-205ENST00000447124 PAPPA-AS1Q5QFB9 102 aa12.59□□□□□ -0.39
SDC1-205ENST00000447124 ALKBH7Q9BT30 221 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 152.5 ms