RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 A0A1B0GXF2 115 aa12.62□□□□□ -0.39
SHROOM1-204ENST00000440118 PPBPP02775 128 aa12.62□□□□□ -0.39
SHROOM1-204ENST00000440118 ATP5L2Q7Z4Y8 100 aa12.62□□□□□ -0.39
SHROOM1-204ENST00000440118 TRAPPC1Q9Y5R8 145 aa12.62□□□□□ -0.39
SHROOM1-204ENST00000440118 TRGC2P03986 189 aa12.61□□□□□ -0.39
SHROOM1-204ENST00000440118 RPL32P62910 135 aaKnown RBP12.61□□□□□ -0.39
SHROOM1-204ENST00000440118 ORMDL3Q8N138 153 aa12.61□□□□□ -0.39
SHROOM1-204ENST00000440118 GNB1LQ9BYB4 327 aa12.61□□□□□ -0.39
SHROOM1-204ENST00000440118 OXTP01178 125 aa12.6□□□□□ -0.39
SHROOM1-204ENST00000440118 NPYP01303 97 aa12.6□□□□□ -0.39
SHROOM1-204ENST00000440118 SYCNQ0VAF6 134 aa12.6□□□□□ -0.39
SHROOM1-204ENST00000440118 TIMM21Q9BVV7 248 aa12.6□□□□□ -0.39
SHROOM1-204ENST00000440118 PLAC8Q9NZF1 115 aa12.6□□□□□ -0.39
SHROOM1-204ENST00000440118 PHOX2AO14813 284 aa12.59□□□□□ -0.39
SHROOM1-204ENST00000440118 RPL39P62891 51 aaKnown RBP12.59□□□□□ -0.39
SHROOM1-204ENST00000440118 STPG4Q8N801 248 aa12.59□□□□□ -0.39
SHROOM1-204ENST00000440118 LINC00474Q9P2X8 69 aa12.59□□□□□ -0.39
SHROOM1-204ENST00000440118 A0A096LNI7 61 aa12.58□□□□□ -0.4
SHROOM1-204ENST00000440118 C5orf52A6NGY3 159 aa12.58□□□□□ -0.4
SHROOM1-204ENST00000440118 APOMO95445 188 aa12.58□□□□□ -0.4
SHROOM1-204ENST00000440118 SPANXA1Q9NS26 97 aa12.58□□□□□ -0.4
SHROOM1-204ENST00000440118 HNRNPA3P51991 378 aaKnown RBP12.57□□□□□ -0.4
SHROOM1-204ENST00000440118 TMEM136Q6ZRR5 245 aa12.57□□□□□ -0.4
SHROOM1-204ENST00000440118 PRELID3AQ96N28 172 aa12.57□□□□□ -0.4
SHROOM1-204ENST00000440118 IGLV4-69A0A075B6H9 119 aa12.56□□□□□ -0.4
SHROOM1-204ENST00000440118 SNRPEP62304 92 aaKnown RBP12.56□□□□□ -0.4
SHROOM1-204ENST00000440118 C5orf38Q86SI9 138 aa12.56□□□□□ -0.4
SHROOM1-204ENST00000440118 CAMK2N2Q96S95 79 aa12.56□□□□□ -0.4
SHROOM1-204ENST00000440118 S100A2P29034 98 aa12.55□□□□□ -0.4
SHROOM1-204ENST00000440118 NDUFA6P56556 154 aa12.55□□□□□ -0.4
SHROOM1-204ENST00000440118 IFITM10A6NMD0 228 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BKO60814 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BJP06899 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BOP23527 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BBP33778 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 IFI27P40305 119 aaPredicted RBP12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BDP58876 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BCP62807 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 FABP9Q0Z7S8 132 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST2H2BEQ16778 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BHQ93079 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BNQ99877 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 HIST1H2BMQ99879 126 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 PKHD1L1Q86WI1 4243 aa12.54□□□□□ -0.4
SHROOM1-204ENST00000440118 SPAG11BQ08648 103 aa12.53□□□□□ -0.4
SHROOM1-204ENST00000440118 MAP1LC3AQ9H492 121 aa12.53□□□□□ -0.4
SHROOM1-204ENST00000440118 LRP1Q07954 4544 aaKnown RBP12.52□□□□□ -0.4
SHROOM1-204ENST00000440118 LOC107984640A0A0U1RRK4 108 aa12.52□□□□□ -0.41
SHROOM1-204ENST00000440118 LOC389332A0A1B0GUA5 103 aa12.52□□□□□ -0.41
SHROOM1-204ENST00000440118 GAGE2BQ13066 116 aa12.52□□□□□ -0.41
SHROOM1-204ENST00000440118 COA6Q5JTJ3 125 aaKnown RBP12.52□□□□□ -0.41
SHROOM1-204ENST00000440118 LAMTOR2Q9Y2Q5 125 aa12.52□□□□□ -0.41
SHROOM1-204ENST00000440118 AKR1D1P51857 326 aa12.51□□□□□ -0.41
SHROOM1-204ENST00000440118 MRPS36P82909 103 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-204ENST00000440118 Q6ZRU5 148 aa12.51□□□□□ -0.41
SHROOM1-204ENST00000440118 OPRPNQ99935 248 aaPredicted RBP12.51□□□□□ -0.41
SHROOM1-204ENST00000440118 MRPL18Q9H0U6 180 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-204ENST00000440118 ORAOV1Q8WV07 137 aa12.5□□□□□ -0.41
SHROOM1-204ENST00000440118 C2orf48Q96LS8 159 aa12.5□□□□□ -0.41
SHROOM1-204ENST00000440118 PTTG1IPP53801 180 aa12.49□□□□□ -0.41
SHROOM1-204ENST00000440118 RPL18AQ02543 176 aaKnown RBP12.49□□□□□ -0.41
SHROOM1-204ENST00000440118 OR10D4PQ8NGN7 298 aa12.49□□□□□ -0.41
SHROOM1-204ENST00000440118 PRR3P79522 188 aaKnown RBP12.48□□□□□ -0.41
SHROOM1-204ENST00000440118 FAT3Q8TDW7 4589 aa12.48□□□□□ -0.41
SHROOM1-204ENST00000440118 SERTAD4-AS1Q5TG53 156 aa12.47□□□□□ -0.41
SHROOM1-204ENST00000440118 Q6ZN92 141 aa12.46□□□□□ -0.41
SHROOM1-204ENST00000440118 TMEM141Q96I45 108 aa12.46□□□□□ -0.41
SHROOM1-204ENST00000440118 C2orf88Q9BSF0 95 aa12.46□□□□□ -0.41
SHROOM1-204ENST00000440118 CYSLTR1Q9Y271 337 aa12.46□□□□□ -0.41
SHROOM1-204ENST00000440118 TEX43Q6ZNM6 134 aa12.45□□□□□ -0.42
SHROOM1-204ENST00000440118 Q8N8P6 123 aa12.45□□□□□ -0.42
SHROOM1-204ENST00000440118 IGHV3OR16-9A0A0B4J2B5 98 aa12.44□□□□□ -0.42
SHROOM1-204ENST00000440118 NDUFA1O15239 70 aa12.44□□□□□ -0.42
SHROOM1-204ENST00000440118 SMIM6P0DI80 62 aa12.44□□□□□ -0.42
SHROOM1-204ENST00000440118 FAM104AQ969W3 186 aa12.44□□□□□ -0.42
SHROOM1-204ENST00000440118 PYGO1Q9Y3Y4 419 aa12.44□□□□□ -0.42
SHROOM1-204ENST00000440118 IGLV4-3A0A075B6K6 122 aa12.43□□□□□ -0.42
SHROOM1-204ENST00000440118 A0A0J9YXV3 536 aa12.43□□□□□ -0.42
SHROOM1-204ENST00000440118 ORMDL2Q53FV1 153 aa12.43□□□□□ -0.42
SHROOM1-204ENST00000440118 BAGE3Q86Y29 109 aa12.43□□□□□ -0.42
SHROOM1-204ENST00000440118 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.42□□□□□ -0.42
SHROOM1-204ENST00000440118 C2orf66Q6UXQ4 117 aa12.42□□□□□ -0.42
SHROOM1-204ENST00000440118 PACRGQ96M98 296 aaPredicted RBP12.42□□□□□ -0.42
SHROOM1-204ENST00000440118 PRSS47A8MTI9 375 aa12.41□□□□□ -0.42
SHROOM1-204ENST00000440118 F8WDY8 70 aa12.41□□□□□ -0.42
SHROOM1-204ENST00000440118 HIST3H2BBQ8N257 126 aa12.41□□□□□ -0.42
SHROOM1-204ENST00000440118 MRPL35Q9NZE8 188 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-204ENST00000440118 RNF151Q2KHN1 245 aa12.4□□□□□ -0.42
SHROOM1-204ENST00000440118 Q6ZRP5 223 aa12.4□□□□□ -0.42
SHROOM1-204ENST00000440118 NXT2Q9NPJ8 142 aaKnown RBP12.4□□□□□ -0.42
SHROOM1-204ENST00000440118 K7EMI3 77 aa12.39□□□□□ -0.43
SHROOM1-204ENST00000440118 VCX2Q9H322 139 aa12.39□□□□□ -0.43
SHROOM1-204ENST00000440118 PLA2G2DQ9UNK4 145 aa12.39□□□□□ -0.43
SHROOM1-204ENST00000440118 A0A087WZ39 114 aa12.38□□□□□ -0.43
SHROOM1-204ENST00000440118 C9orf116Q5BN46 136 aaPredicted RBP12.38□□□□□ -0.43
SHROOM1-204ENST00000440118 LINC00242Q5T6M2 205 aa12.38□□□□□ -0.43
SHROOM1-204ENST00000440118 LINC00518Q8N0U6 118 aa12.38□□□□□ -0.43
SHROOM1-204ENST00000440118 G0S2P27469 103 aa12.37□□□□□ -0.43
SHROOM1-204ENST00000440118 UBE2D1P51668 147 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms