RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 C6orf99Q4VX62 202 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 LY6HO94772 140 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 NCR3O14931 201 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 SYCNQ0VAF6 134 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 HRCT1Q6UXD1 115 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 TSHBP01222 138 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 COL4A4P53420 1690 aaPredicted RBP5.35□□□□□ -1.55
VPS53-204ENST00000437048 A0A1B0GUV1 79 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 DEFB112Q30KQ8 113 aa5.35□□□□□ -1.55
VPS53-204ENST00000437048 EPG5Q9HCE0 2579 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 LELP1Q5T871 98 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 Q6ZQY7 126 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 TTTY13Q9BZ97 58 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 PLA2G2CQ5R387 149 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 C7orf33Q8WU49 177 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 ZFAND3Q9H8U3 227 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 Q8N3U1 123 aa5.34□□□□□ -1.55
VPS53-204ENST00000437048 C10orf25Q5T742 122 aa5.34□□□□□ -1.56
VPS53-204ENST00000437048 LINC00208Q96KT6 92 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 BPTFQ12830 3046 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 ZNF295-AS1Q8N0V1 137 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 AMELXQ99217 191 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 MAP6D1Q9H9H5 199 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 KLK12Q9UKR0 248 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 PIP4P1Q86T03 277 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 SMIM11BQ8TCY0 68 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 C2orf48Q96LS8 159 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 CHD8Q9HCK8 2581 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 MAPKAPK5-AS1Q8N8E1 139 aa5.33□□□□□ -1.56
VPS53-204ENST00000437048 DEFB121Q5J5C9 76 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 PRAC2D3DTV9 90 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 A6NDX4 124 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 ZNF503-AS2A6NEH8 195 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 ELOF1P60002 83 aaKnown RBP5.32□□□□□ -1.56
VPS53-204ENST00000437048 Q6ZQT7 251 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 C8orf87E5RJ46 101 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 CD164Q04900 197 aa5.32□□□□□ -1.56
VPS53-204ENST00000437048 CRIP2P52943 208 aaPredicted RBP5.31□□□□□ -1.56
VPS53-204ENST00000437048 RETNLBQ9BQ08 111 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 LOC110117498A0A087WWA1 95 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 RUSC1-AS1Q66K80 236 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 Q8N2B8 174 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 SMAD5-AS1Q9Y6J3 95 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 Q8N6K4 173 aa5.31□□□□□ -1.56
VPS53-204ENST00000437048 LY6G6EA0A0G2JKS1 128 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 LY6LH3BQJ8 138 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 C1orf158Q8N1D5 194 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 U3KQA8 63 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 SBSPONQ8IVN8 264 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 LINC00269Q8N2A0 174 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 IGLV10-54A0A075B6I4 117 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 TMEM105Q8N8V8 129 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 CLPSL2Q6UWE3 100 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 HILS1P60008 231 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 PRM2P04554 102 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 SNURFQ9Y675 71 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 RNF223E7ERA6 249 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 CDC42SE2Q9NRR3 84 aa5.3□□□□□ -1.56
VPS53-204ENST00000437048 MAPK1IP1LQ8NDC0 245 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 AKAP13Q12802 2813 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 C1orf137Q5JT78 98 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 WISP2O76076 250 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 SERTAD4-AS1Q5TG53 156 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 WFDC10BQ8IUB3 73 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 DEFB1P60022 68 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 IGHV4-59P01825 116 aa5.29□□□□□ -1.56
VPS53-204ENST00000437048 DEFB113Q30KQ7 82 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 HECTD1Q9ULT8 2610 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 CRYGDP07320 174 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 RNASE3P12724 160 aaKnown RBP5.28□□□□□ -1.56
VPS53-204ENST00000437048 CDIP1Q9H305 208 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 SMIM1B2RUZ4 78 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 MAST4O15021 2626 aa5.28□□□□□ -1.56
VPS53-204ENST00000437048 WIPF1O43516 503 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 DNAJC9-AS1A6NH13 148 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 LINC01547P58512 204 aaPredicted RBP5.27□□□□□ -1.57
VPS53-204ENST00000437048 E7EUB6 86 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 ATP11AUNQ6ZP68 121 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 Q8N7P7 452 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 ATRQ13535 2644 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 ACYP2P14621 99 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 KLKP1Q107X0 134 aa5.27□□□□□ -1.57
VPS53-204ENST00000437048 ZFP36P26651 326 aaKnown RBP5.26□□□□□ -1.57
VPS53-204ENST00000437048 CRIP1P50238 77 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 XAGE1AQ9HD64 81 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 IGLV5-45A0A087WSX0 123 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 C11orf45Q8TAV5 145 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 BRWD1-AS2P59051 145 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 BEAN1Q3B7T3 259 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 SPRNQ5BIV9 151 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 FAM19A1Q7Z5A9 133 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 C3orf84H3BNL1 204 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 A8MZ25 164 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 SLURP1P55000 103 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 LINC00310P59036 64 aa5.26□□□□□ -1.57
VPS53-204ENST00000437048 CEP295Q9C0D2 2601 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 APRG1Q8IVJ8 170 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 MUC22E2RYF6 1773 aaPredicted RBP5.25□□□□□ -1.57
VPS53-204ENST00000437048 LINC00959A0A1B0GUT2 108 aa5.25□□□□□ -1.57
VPS53-204ENST00000437048 IGLV5-39A0A0G2JS06 123 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms