RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 SLC25A20O43772 301 aa5.96□□□□□ -1.46
CD44-208ENST00000428726 RNF183Q96D59 192 aa5.96□□□□□ -1.46
CD44-208ENST00000428726 ERG28Q9UKR5 140 aa5.96□□□□□ -1.46
CD44-208ENST00000428726 TMEM223A0PJW6 202 aa5.96□□□□□ -1.46
CD44-208ENST00000428726 LEPROTO15243 131 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 RS1O15537 224 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 RNASE1P07998 156 aaKnown RBP5.95□□□□□ -1.46
CD44-208ENST00000428726 C16orf95Q9H693 158 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 RETNQ9HD89 108 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 UBE2D4Q9Y2X8 147 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 IGLV4-60A0A075B6I1 120 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 CMC4P56277 68 aaPredicted RBP5.95□□□□□ -1.46
CD44-208ENST00000428726 SPATA25Q9BR10 227 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 NDUFA12Q9UI09 145 aa5.95□□□□□ -1.46
CD44-208ENST00000428726 HILS1P60008 231 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 AMELXQ99217 191 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 SS18L2Q9UHA2 77 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 TTC32Q5I0X7 151 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 TEN1Q86WV5 123 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 SPANXA1Q9NS26 97 aa5.94□□□□□ -1.46
CD44-208ENST00000428726 TRAV4A0A0B4J268 109 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 UBE2L6O14933 153 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 PFN2P35080 140 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 UBE2D3P61077 147 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 UBE2D2P62837 147 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 A0A0J9YXY3 114 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 TRIAP1O43715 76 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 IGLV1-51P01701 117 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 IGHV3-33P01772 117 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 XCL1P47992 114 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 MRPS36P82909 103 aaKnown RBP5.93□□□□□ -1.46
CD44-208ENST00000428726 RPL36AP83881 106 aaKnown RBP5.93□□□□□ -1.46
CD44-208ENST00000428726 RPL36ALQ969Q0 106 aaKnown RBP5.93□□□□□ -1.46
CD44-208ENST00000428726 Q9H8V8 135 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 B5MCH6 92 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 MEIG1Q5JSS6 88 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 C19orf73Q9NVV2 129 aa5.93□□□□□ -1.46
CD44-208ENST00000428726 CYSRT1A8MQ03 144 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 K7EQD1 137 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 IL17DQ8TAD2 202 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 PPDPFLQ8WWR9 84 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 ANAPC13Q9BS18 74 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 PLAC8L1A1L4L8 177 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 GYPEP15421 78 aa5.92□□□□□ -1.46
CD44-208ENST00000428726 FAM222AQ5U5X8 452 aa5.91□□□□□ -1.46
CD44-208ENST00000428726 TMEM263Q8WUH6 116 aaKnown RBP5.91□□□□□ -1.46
CD44-208ENST00000428726 TINCRA0A1B0GVN0 87 aa5.91□□□□□ -1.46
CD44-208ENST00000428726 TMEM101Q96IK0 257 aa5.91□□□□□ -1.46
CD44-208ENST00000428726 LINC00242Q5T6M2 205 aa5.91□□□□□ -1.46
CD44-208ENST00000428726 CELA1Q9UNI1 258 aa5.91□□□□□ -1.46
CD44-208ENST00000428726 STAB2Q8WWQ8 2551 aa5.9□□□□□ -1.46
CD44-208ENST00000428726 TRBV10-1A0A0K0K1A3 114 aa5.9□□□□□ -1.46
CD44-208ENST00000428726 C2orf82Q6UX34 121 aa5.9□□□□□ -1.46
CD44-208ENST00000428726 PRIMA1Q86XR5 153 aa5.9□□□□□ -1.46
CD44-208ENST00000428726 IGHV1-58A0A0C4DH39 117 aa5.9□□□□□ -1.47
CD44-208ENST00000428726 LYRM7Q5U5X0 104 aa5.9□□□□□ -1.47
CD44-208ENST00000428726 F5H768 121 aa5.89□□□□□ -1.47
CD44-208ENST00000428726 MRAPQ8TCY5 172 aa5.89□□□□□ -1.47
CD44-208ENST00000428726 RPL13AP40429 203 aaKnown RBP5.89□□□□□ -1.47
CD44-208ENST00000428726 PRR3P79522 188 aaKnown RBP5.89□□□□□ -1.47
CD44-208ENST00000428726 LINC01620Q4KN68 170 aa5.89□□□□□ -1.47
CD44-208ENST00000428726 SNCGO76070 127 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 DAZ2Q13117 558 aaKnown RBP5.88□□□□□ -1.47
CD44-208ENST00000428726 C16orf74Q96GX8 76 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 DAZ4Q86SG3 579 aaKnown RBP5.88□□□□□ -1.47
CD44-208ENST00000428726 CSNK1G2-AS1Q8NCQ2 148 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 VSIG2Q96IQ7 327 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 DAZ3Q9NR90 486 aaKnown RBP5.88□□□□□ -1.47
CD44-208ENST00000428726 FHL2Q14192 279 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 C9orf116Q5BN46 136 aaPredicted RBP5.88□□□□□ -1.47
CD44-208ENST00000428726 ZFAND6Q6FIF0 208 aa5.88□□□□□ -1.47
CD44-208ENST00000428726 CCDC179H3BU77 68 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 TIRAPP58753 221 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 C15orf53Q8NAA6 179 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 TMEM243Q9BU79 118 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 ICOSQ9Y6W8 199 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.87□□□□□ -1.47
CD44-208ENST00000428726 GAGE2BQ13066 116 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 GAGE2EQ4V326 116 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 GAGE2DQ9UEU5 116 aa5.87□□□□□ -1.47
CD44-208ENST00000428726 A0A0B4J2C4 111 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 ATXN8Q156A1 80 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 Q9HAA7 133 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 CSDC2Q9Y534 153 aaKnown RBP5.86□□□□□ -1.47
CD44-208ENST00000428726 IGLV5-45A0A087WSX0 123 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 TRAV8-4A0A0B4J246 113 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 H7C423 109 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 LINC00158P58513 81 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 SOSTDC1Q6X4U4 206 aa5.86□□□□□ -1.47
CD44-208ENST00000428726 IGHV4-28A0A0C4DH34 117 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 HERVK_113P63121 156 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 LITAFQ99732 161 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 OVOL2Q9BRP0 275 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 CDC42SE2Q9NRR3 84 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 LINC00269Q8N2A0 174 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 LYSTQ99698 3801 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 SPANXDQ9BXN6 97 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 SPANXCQ9NY87 97 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 SMIM1B2RUZ4 78 aa5.85□□□□□ -1.47
CD44-208ENST00000428726 PAX4O43316 350 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms