RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 DPM2O94777 84 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 C3orf79P0CE67 100 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 HERVK_113P61574 105 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 C14orf177Q52M58 125 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 TMEM170BQ5T4T1 132 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 LINC00173Q6ZV60 143 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 OR10D4PQ8NGN7 298 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 CHAC1Q9BUX1 264 aa6.79□□□□□ -1.32
CD44-207ENST00000425428 A0A0J9YXV3 536 aa6.78□□□□□ -1.32
CD44-207ENST00000425428 SCGB1D1O95968 90 aa6.78□□□□□ -1.32
CD44-207ENST00000425428 IGKCP01834 107 aa6.78□□□□□ -1.32
CD44-207ENST00000425428 ZC2HC1BQ5TFG8 222 aa6.78□□□□□ -1.32
CD44-207ENST00000425428 Q6ZR54 194 aa6.78□□□□□ -1.32
CD44-207ENST00000425428 HSBP1L1C9JCN9 74 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 IGLC3P0DOY3 106 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 LINC00242Q5T6M2 205 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 FAM19A3Q7Z5A8 133 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 MRPL35Q9NZE8 188 aaKnown RBP6.77□□□□□ -1.33
CD44-207ENST00000425428 PRSS2P07478 247 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 ODF1Q14990 250 aa6.77□□□□□ -1.33
CD44-207ENST00000425428 IGHV1-58A0A0C4DH39 117 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 LCE2BO14633 110 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 LINC01545Q5VT33 79 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 C5orf38Q86SI9 138 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 LINC01561Q8N1V8 128 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 FAM104AQ969W3 186 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 KRTAP1-5Q9BYS1 174 aa6.76□□□□□ -1.33
CD44-207ENST00000425428 ZNF561-AS1K7EIQ3 104 aa6.75□□□□□ -1.33
CD44-207ENST00000425428 ALMS1Q8TCU4 4167 aa6.75□□□□□ -1.33
CD44-207ENST00000425428 A0A087WZ39 114 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 IGHV3OR16-9A0A0B4J2B5 98 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 FOXI1Q12951 378 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 LYSTQ99698 3801 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 PMCHL2Q9BQD1 86 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 C11orf86A6NJI1 115 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 CDKN2A-AS1Q9UH64 79 aa6.74□□□□□ -1.33
CD44-207ENST00000425428 IGLV4-69A0A075B6H9 119 aa6.73□□□□□ -1.33
CD44-207ENST00000425428 COX6A2Q02221 97 aa6.73□□□□□ -1.33
CD44-207ENST00000425428 LINC00336Q6ZUF6 198 aa6.73□□□□□ -1.33
CD44-207ENST00000425428 ORAOV1Q8WV07 137 aa6.73□□□□□ -1.33
CD44-207ENST00000425428 TOMM7Q9P0U1 55 aa6.73□□□□□ -1.33
CD44-207ENST00000425428 IGLV5-45A0A087WSX0 123 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 ZNF22P17026 224 aaPredicted RBP6.72□□□□□ -1.33
CD44-207ENST00000425428 CKS1BP61024 79 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 C6orf226Q5I0X4 101 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 SFTA2Q6UW10 78 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.72□□□□□ -1.33
CD44-207ENST00000425428 hDV102S1A0JD36 115 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 USP17L23D6RBM5 183 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 SPINK8P0C7L1 97 aa6.72□□□□□ -1.33
CD44-207ENST00000425428 IGHV3-64A0A075B6Q5 118 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 F8WDY8 70 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 CXCL5P42830 114 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 SPAG11BQ08648 103 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 PLEKHB2Q96CS7 222 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 VPS13DQ5THJ4 4388 aa6.71□□□□□ -1.34
CD44-207ENST00000425428 LGALS3P17931 250 aaKnown RBP6.7□□□□□ -1.34
CD44-207ENST00000425428 S100A12P80511 92 aa6.7□□□□□ -1.34
CD44-207ENST00000425428 JOSD1Q15040 202 aaPredicted RBP6.7□□□□□ -1.34
CD44-207ENST00000425428 COX7B2Q8TF08 81 aa6.7□□□□□ -1.34
CD44-207ENST00000425428 PKIGQ9Y2B9 76 aa6.7□□□□□ -1.34
CD44-207ENST00000425428 TMEM223A0PJW6 202 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 LECT2O14960 151 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 KRTAP26-1Q6PEX3 210 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 Q8IZM0 81 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 SMIM1B2RUZ4 78 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 NDUFA1O15239 70 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 HIGD2BQ4VC39 106 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 Q6ZRN7 208 aaPredicted RBP6.69□□□□□ -1.34
CD44-207ENST00000425428 ATOH7Q8N100 152 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 CAMK2N2Q96S95 79 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 VAMP8Q9BV40 100 aa6.69□□□□□ -1.34
CD44-207ENST00000425428 A0A087WTM6 91 aa6.68□□□□□ -1.34
CD44-207ENST00000425428 GVQW2A0A096LPI5 108 aaPredicted RBP6.68□□□□□ -1.34
CD44-207ENST00000425428 LEPROTO15243 131 aa6.68□□□□□ -1.34
CD44-207ENST00000425428 C2orf48Q96LS8 159 aa6.68□□□□□ -1.34
CD44-207ENST00000425428 DNAH6Q9C0G6 4158 aa6.68□□□□□ -1.34
CD44-207ENST00000425428 LINC00587B1AMM8 73 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 NMUP48645 174 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 MYMXA0A1B0GTQ4 84 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 E9PLD3 99 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 STPG4Q8N801 248 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 Q8N814 137 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 MAPKAPK5-AS1Q8N8E1 139 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 C15orf56Q8N910 161 aa6.67□□□□□ -1.34
CD44-207ENST00000425428 NTN5Q8WTR8 489 aaPredicted RBP6.67□□□□□ -1.34
CD44-207ENST00000425428 DNAH1Q9P2D7 4330 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.66□□□□□ -1.34
CD44-207ENST00000425428 IGLV5-39A0A0G2JS06 123 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 J3QQQ9 107 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 RTL8CO15255 209 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 HERV-K104P63124 156 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 SYCNQ0VAF6 134 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 CARD19Q96LW7 228 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 KMT2AQ03164 3969 aa6.66□□□□□ -1.34
CD44-207ENST00000425428 LRCOL1A6NCL2 159 aa6.65□□□□□ -1.34
CD44-207ENST00000425428 TNP2Q05952 138 aa6.65□□□□□ -1.34
CD44-207ENST00000425428 CIRBPQ14011 172 aaKnown RBP6.65□□□□□ -1.34
CD44-207ENST00000425428 TRBV30A0A0K0K1B3 111 aa6.64□□□□□ -1.35
CD44-207ENST00000425428 SMIM6P0DI80 62 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 1599.4 ms