RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 A0A1B0GUT8 65 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 SLC25A16P16260 332 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 CCL8P80075 99 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 NTM-AS1Q6ZSK4 140 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 LY6G5BQ8NDX9 201 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 C16orf95Q9H693 158 aa3.43□□□□□ -1.86
VPS13A-207ENST00000419472 FXYD7P58549 80 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 SPINK9Q5DT21 86 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 SDIM1Q6ZPB5 146 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 LEAP2Q969E1 77 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 ARHGAP32A7KAX9 2087 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 PLXNB1O43157 2135 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 DSCAMO60469 2012 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.42□□□□□ -1.861e-8■■■■■ 27.8
VPS13A-207ENST00000419472 TRAV40A0A0B4J280 105 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 IQCF6A8MYZ5 107 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 D6R8Y8 96 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 ATXN8Q156A1 80 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 LINC00643Q86TS7 51 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 FAM167A-AS1Q96KT0 104 aa3.42□□□□□ -1.86
VPS13A-207ENST00000419472 C19orf84I3L1E1 186 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 M0R381 172 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 PRB3Q04118 309 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-207ENST00000419472 BSPH1Q075Z2 132 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 ORMDL3Q8N138 153 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 Q8N8P6 123 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 LINC01560Q8TB33 94 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 C10orf105Q8TEF2 133 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 IGKV3-20P01619 116 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 ARMS2P0C7Q2 107 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 PLNP26678 52 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 FAM104BQ5XKR9 115 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 PRO1854Q9UHT4 67 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 CSPG4Q6UVK1 2322 aa3.41□□□□□ -1.86
VPS13A-207ENST00000419472 TRAV12-2A0A075B6T6 113 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 TRAV41A0A0B4J266 112 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 IGHV7-4-1A0A0J9YVY3 117 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 H3BT86 120 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 PYYP10082 97 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 ZNF22P17026 224 aaPredicted RBP3.4□□□□□ -1.86
VPS13A-207ENST00000419472 UBE2L3P68036 154 aaKnown RBP3.4□□□□□ -1.86
VPS13A-207ENST00000419472 DAZ4Q86SG3 579 aaKnown RBP3.4□□□□□ -1.86
VPS13A-207ENST00000419472 DAZ1Q9NQZ3 744 aaKnown RBP3.4□□□□□ -1.86
VPS13A-207ENST00000419472 MRPL35Q9NZE8 188 aaKnown RBP3.4□□□□□ -1.86
VPS13A-207ENST00000419472 ZNRD1Q9P1U0 126 aa3.4□□□□□ -1.86
VPS13A-207ENST00000419472 IGKV1D-17A0A075B6S4 117 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 IGHV3-49A0A0A0MS15 119 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 KRTAP4-8A0A0G2JLE6 195 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 C17orf98A8MV24 154 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 LYNX1G3V0Z9 82 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 LY6HO94772 140 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 LYNX1P0DP58 116 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 LCE3BQ5TA77 95 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 SERP2Q8N6R1 65 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 CCL13Q99616 98 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 NDUFC2O95298 119 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 ADM2Q7Z4H4 148 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 FAM216BQ8N7L0 139 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 SMCR5Q8TEV8 140 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 SERP1Q9Y6X1 66 aa3.4□□□□□ -1.87
VPS13A-207ENST00000419472 TMEM30CPA0ZSE6 113 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 LY6G6DO95868 133 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 IGHV1-46P01743 117 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 MRPL51Q4U2R6 128 aaKnown RBP3.39□□□□□ -1.87
VPS13A-207ENST00000419472 C2orf82Q6UX34 121 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 UNQ9165/PRO28630Q6UXU0 137 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 Q8IYB0 196 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 TRAV12-1A0A0B4J245 112 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 TRBV6-1A0A0K0K1D8 114 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 BPY2O14599 106 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 IGHV3-30P01768 117 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 IGHV3-33P01772 117 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 IGHV3-30-5P0DP03 117 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 NPC2P61916 151 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 VMA21Q3ZAQ7 101 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 RPL39P5Q59GN2 51 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 MAPK1IP1LQ8NDC0 245 aa3.39□□□□□ -1.87
VPS13A-207ENST00000419472 TRBV7-1A0A0A6YYK4 115 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 FSTL3O95633 263 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 TMEM263Q8WUH6 116 aaKnown RBP3.38□□□□□ -1.87
VPS13A-207ENST00000419472 A0A0B4J2C4 111 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 TRBV30A0A0K0K1B3 111 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 NDUFA3O95167 84 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 WFDC11Q8NEX6 87 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 ZNF714Q96N38 554 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 DYNLRB1Q9NP97 96 aa3.38□□□□□ -1.87
VPS13A-207ENST00000419472 IGLV3-9A0A075B6K5 115 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 IGKV1OR2-108A0A075B7D4 117 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 A0A0J9YY99 117 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 ZNF815PA8K554 130 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 F8VRH5 84 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 ZNF861PO60384 105 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 CCL3L1P16619 93 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 CKS2P33552 79 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 SONP18583 2426 aaKnown RBP3.37□□□□□ -1.87
VPS13A-207ENST00000419472 E7EQL1 145 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 TCRAP04437 139 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 CGB3P0DN86 165 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 CGB7P0DN87 165 aa3.37□□□□□ -1.87
VPS13A-207ENST00000419472 DEFB113Q30KQ7 82 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms