RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 TRGV1A0A0A0MS02 117 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 UBE2L6O14933 153 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 HTN1P15515 57 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 C2orf48Q96LS8 159 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 CHCHD5Q9BSY4 110 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 SND1-IT1Q9HBX3 110 aa4.04□□□□□ -1.76
CCDC88A-203ENST00000412148 MUC6Q6W4X9 2439 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 A0A1B0GUV1 79 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 WIPF1O43516 503 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 NDUFA7O95182 113 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 NDUFC2O95298 119 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 ATP5EP2Q5VTU8 51 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 C18orf65Q6ZTR6 163 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 TRAV13-1A0A0B4J241 112 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 PRM2P04554 102 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 GIG44P09565 113 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 COX17Q14061 63 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 DEFB136Q30KP8 78 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 SERTAD4-AS1Q5TG53 156 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 Q6ZTI0 123 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 CSNK1G2-AS1Q8NCQ2 148 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 SMIM11BQ8TCY0 68 aa4.03□□□□□ -1.76
CCDC88A-203ENST00000412148 RIF1Q5UIP0 2472 aaKnown RBP4.03□□□□□ -1.77
CCDC88A-203ENST00000412148 ZFHX2Q9C0A1 2572 aaPredicted RBP4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 TRBV6-8A0A0A6YYG3 113 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 BCE1O60756 84 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 S100A7L2Q5SY68 101 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 LYPD5Q6UWN5 251 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 MIR7-3HGQ8N6C7 128 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 KIR2DL5BQ8NHK3 375 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 XCL2Q9UBD3 114 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 DNAL4O96015 105 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 CCL18P55774 89 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 Q8IZM0 81 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 C16orf95Q9H693 158 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 CELSR1Q9NYQ6 3014 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 SPTA1P02549 2419 aa4.02□□□□□ -1.77
CCDC88A-203ENST00000412148 TRBV10-3A0A0K0K1G6 114 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 JMJD7-PLA2G4BH0Y9G9 81 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 RPL18AQ02543 176 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 C19orf73Q9NVV2 129 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 IGHV4-28A0A0C4DH34 117 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 H3BQ85 93 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 FHL2Q14192 279 aa4.01□□□□□ -1.77
CCDC88A-203ENST00000412148 CCKP06307 115 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 C9orf153Q5TBE3 101 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 LOC100131303A0A0U1RQF7 123 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 CCL24O00175 119 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 IGLV1-51P01701 117 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 DEFB113Q30KQ7 82 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 SMIM20Q8N5G0 67 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 NRGNQ92686 78 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 ORMDL1Q9P0S3 153 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 A0A087WYN8 130 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 LINC00959A0A1B0GUT2 108 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 SS18Q15532 418 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 ZFHX3Q15911 3703 aa4□□□□□ -1.77
CCDC88A-203ENST00000412148 TMEM258P61165 79 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 GAGE2AQ6NT46 116 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 SERP2Q8N6R1 65 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 NOP10Q9NPE3 64 aaKnown RBP3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 SMIM9A6NGZ8 99 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 NDUFC2-KCTD14E9PQ53 114 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 TMEM256-PLSCR3K7ERE1 68 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 LINC00158P58513 81 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 KRTAP1-3Q8IUG1 177 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 UPK3BQ9BT76 320 aa3.99□□□□□ -1.77
CCDC88A-203ENST00000412148 IGLV4-60A0A075B6I1 120 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 J3KT08 172 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 LCE2CQ5TA81 110 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 SPTAN1Q13813 2472 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 TRGV4A0A0C4DH28 118 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 Q9HAA7 133 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 LINC00846Q9NV44 126 aa3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 ASH1LQ9NR48 2969 aaKnown RBP3.98□□□□□ -1.77
CCDC88A-203ENST00000412148 TRGV2A0A075B6R0 118 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 NANOS2P60321 138 aaKnown RBP3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 Q8N814 137 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 AKAP6Q13023 2319 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 LOC110117498A0A087WWA1 95 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 DNAJC9-AS1A6NH13 148 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 LECT2O14960 151 aa3.97□□□□□ -1.77
CCDC88A-203ENST00000412148 hADV29S1A0JD25 119 aa3.96□□□□□ -1.77
CCDC88A-203ENST00000412148 RNASE1P07998 156 aaKnown RBP3.96□□□□□ -1.77
CCDC88A-203ENST00000412148 KIAA0087Q14695 138 aa3.96□□□□□ -1.77
CCDC88A-203ENST00000412148 C14orf132Q9NPU4 83 aa3.96□□□□□ -1.77
CCDC88A-203ENST00000412148 SORL1Q92673 2214 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 CEP295Q9C0D2 2601 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 SEC61GP60059 68 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 C9orf129Q5T035 196 aaKnown RBP3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 CD164L2Q6UWJ8 174 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 RELNP78509 3460 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 PDE6GP18545 87 aa3.96□□□□□ -1.78
CCDC88A-203ENST00000412148 DOPEY1Q5JWR5 2465 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 PAX4O43316 350 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 GYPEP15421 78 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 C6orf226Q5I0X4 101 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 C9orf66Q5T8R8 295 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 LYRM9A8MSI8 78 aa3.95□□□□□ -1.78
CCDC88A-203ENST00000412148 USP17L23D6RBM5 183 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 161 ms