RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 CITED1Q99966 193 aa11.79□□□□□ -0.52
NUP50-202ENST00000396096 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
NUP50-202ENST00000396096 Q9H8V8 135 aa11.78□□□□□ -0.52
NUP50-202ENST00000396096 NSD1Q96L73 2696 aaPredicted RBP11.78□□□□□ -0.52
NUP50-202ENST00000396096 SCGB1C2P0DMR2 95 aa11.78□□□□□ -0.52
NUP50-202ENST00000396096 DEFB130BP0DP73 79 aa11.78□□□□□ -0.52
NUP50-202ENST00000396096 DEFB130AP0DP74 79 aa11.78□□□□□ -0.52
NUP50-202ENST00000396096 ZNF625Q96I27 306 aaPredicted RBP11.78□□□□□ -0.52
NUP50-202ENST00000396096 TRBV30A0A0K0K1B3 111 aa11.77□□□□□ -0.53
NUP50-202ENST00000396096 J3QR89 54 aa11.77□□□□□ -0.53
NUP50-202ENST00000396096 GAGE6Q13070 117 aa11.77□□□□□ -0.53
NUP50-202ENST00000396096 LYRM9A8MSI8 78 aa11.76□□□□□ -0.53
NUP50-202ENST00000396096 HERV-K104P63124 156 aa11.76□□□□□ -0.53
NUP50-202ENST00000396096 PCP4P48539 62 aa11.75□□□□□ -0.53
NUP50-202ENST00000396096 PPDPFQ9H3Y8 114 aa11.75□□□□□ -0.53
NUP50-202ENST00000396096 FN1P02751 2386 aaKnown RBP11.75□□□□□ -0.53
NUP50-202ENST00000396096 IGLV4-60A0A075B6I1 120 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 CHCHD5Q9BSY4 110 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 H7C2G1 150 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 M0QXV9 152 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 GYPEP15421 78 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 APOC4P55056 127 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 Q1RN00 199 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 COPS9Q8WXC6 57 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 PRO0255Q9UI72 69 aa11.74□□□□□ -0.53
NUP50-202ENST00000396096 LINC00308Q8TCZ7 52 aa11.73□□□□□ -0.53
NUP50-202ENST00000396096 NPC2P61916 151 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 FAM222AQ5U5X8 452 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 PRIMA1Q86XR5 153 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 WFDC9Q8NEX5 89 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 WIPF1O43516 503 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 TRIAP1O43715 76 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 DAND5Q8N907 189 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 ICOSQ9Y6W8 199 aa11.72□□□□□ -0.53
NUP50-202ENST00000396096 NOTCH2Q04721 2471 aa11.71□□□□□ -0.53
NUP50-202ENST00000396096 IGHV3OR16-9A0A0B4J2B5 98 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 FOXI1Q12951 378 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 ATXN8Q156A1 80 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 TEN1Q86WV5 123 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 LINC01600Q96MT4 127 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 A0A1B0GUV1 79 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 DEFB135Q30KP9 77 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 COX7B2Q8TF08 81 aa11.7□□□□□ -0.54
NUP50-202ENST00000396096 A0A087WZ39 114 aa11.68□□□□□ -0.54
NUP50-202ENST00000396096 MEIG1Q5JSS6 88 aa11.68□□□□□ -0.54
NUP50-202ENST00000396096 RPL13AP40429 203 aaKnown RBP11.68□□□□□ -0.54
NUP50-202ENST00000396096 SOSTDC1Q6X4U4 206 aa11.68□□□□□ -0.54
NUP50-202ENST00000396096 IGHV4-28A0A0C4DH34 117 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 LINC00959A0A1B0GUT2 108 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 PAX4O43316 350 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 SLC25A20O43772 301 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 LINC01620Q4KN68 170 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 PPDPFLQ8WWR9 84 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 SPATA25Q9BR10 227 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 VWFP04275 2813 aa11.67□□□□□ -0.54
NUP50-202ENST00000396096 HIVEP1P15822 2718 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 C9JAW5 83 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 COX6CP09669 75 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 MIFP14174 115 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 IGKV3OR2-268A0A0C4DH90 116 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 Q8NAQ8 132 aa11.66□□□□□ -0.54
NUP50-202ENST00000396096 CARD19Q96LW7 228 aa11.65□□□□□ -0.54
NUP50-202ENST00000396096 A0A0U1RRA0 63 aa11.64□□□□□ -0.55
NUP50-202ENST00000396096 GAGE12HA6NDE8 117 aa11.64□□□□□ -0.55
NUP50-202ENST00000396096 DAD1P61803 113 aa11.63□□□□□ -0.55
NUP50-202ENST00000396096 ANKRD29Q8N6D5 301 aa11.63□□□□□ -0.55
NUP50-202ENST00000396096 TENM1Q9UKZ4 2725 aa11.63□□□□□ -0.55
NUP50-202ENST00000396096 TRAV26-1A0A087WT03 109 aa11.63□□□□□ -0.55
NUP50-202ENST00000396096 LINC01561Q8N1V8 128 aa11.63□□□□□ -0.55
NUP50-202ENST00000396096 TRBV10-2A0A0K0K1G8 114 aa11.62□□□□□ -0.55
NUP50-202ENST00000396096 TMEM262E9PQX1 116 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 DEFB4AO15263 64 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 SS18Q15532 418 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 LST1O00453 97 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 ATP5G1P05496 136 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 C21orf62-AS1Q17RA5 79 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 SHISA2Q6UWI4 295 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 TOMM7Q9P0U1 55 aa11.61□□□□□ -0.55
NUP50-202ENST00000396096 IGHV4-30-4P0DP06 118 aa11.6□□□□□ -0.55
NUP50-202ENST00000396096 C5orf38Q86SI9 138 aa11.6□□□□□ -0.55
NUP50-202ENST00000396096 CELA1Q9UNI1 258 aa11.6□□□□□ -0.55
NUP50-202ENST00000396096 FLNBO75369 2602 aaKnown RBP11.6□□□□□ -0.55
NUP50-202ENST00000396096 TEP1Q99973 2627 aaKnown RBP11.6□□□□□ -0.55
NUP50-202ENST00000396096 IBA57-AS1B1ANH7 110 aa11.59□□□□□ -0.55
NUP50-202ENST00000396096 SPART-AS1P0CW21 52 aa11.59□□□□□ -0.55
NUP50-202ENST00000396096 A0A096LPF7 62 aa11.59□□□□□ -0.55
NUP50-202ENST00000396096 SIGMAR1Q99720 223 aa11.59□□□□□ -0.55
NUP50-202ENST00000396096 BAHCC1Q9P281 2608 aa11.59□□□□□ -0.55
NUP50-202ENST00000396096 MIR7-3HGQ8N6C7 128 aa11.58□□□□□ -0.56
NUP50-202ENST00000396096 H3BT86 120 aa11.57□□□□□ -0.56
NUP50-202ENST00000396096 CLEC2BQ92478 149 aa11.57□□□□□ -0.56
NUP50-202ENST00000396096 COX7A2LO14548 114 aa11.57□□□□□ -0.56
NUP50-202ENST00000396096 ATRQ13535 2644 aa11.56□□□□□ -0.56
NUP50-202ENST00000396096 XCL1P47992 114 aa11.56□□□□□ -0.56
NUP50-202ENST00000396096 Q8IZM0 81 aa11.56□□□□□ -0.56
NUP50-202ENST00000396096 TRAV13-2A0A0B4J235 113 aa11.55□□□□□ -0.56
NUP50-202ENST00000396096 CDIP1Q9H305 208 aa11.55□□□□□ -0.56
NUP50-202ENST00000396096 NBEAL2Q6ZNJ1 2754 aa11.55□□□□□ -0.56
NUP50-202ENST00000396096 LINC00158P58513 81 aa11.55□□□□□ -0.56
NUP50-202ENST00000396096 MRPL23Q16540 153 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms