RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 BATFQ16520 125 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 C12orf57Q99622 126 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV3-64A0A075B6Q5 118 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 SERF1AO75920 110 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 TLX1NBP0CAT3 122 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 KIAA0087Q14695 138 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 PMVKQ15126 192 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 ANGP03950 147 aaKnown RBP4.58□□□□□ -1.68
LIMA1-202ENST00000394943 SNRPEP62304 92 aaKnown RBP4.58□□□□□ -1.68
LIMA1-202ENST00000394943 TNP2Q05952 138 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 CHCHD10Q8WYQ3 142 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-202ENST00000394943 LOC389332A0A1B0GUA5 103 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV1-58A0A0C4DH39 117 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 PRSS29PA6NIE9 313 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 NDUFA6P56556 154 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 SS18Q15532 418 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 TEX43Q6ZNM6 134 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 RYR1P21817 5038 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 HERVK_113P63121 156 aa4.57□□□□□ -1.68
LIMA1-202ENST00000394943 C5orf52A6NGY3 159 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 WFDC2Q14508 124 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 PPDPFQ9H3Y8 114 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 HSPG2P98160 4391 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 CRPP02741 224 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 AMMECR1LQ6DCA0 310 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 SCGB3A1Q96QR1 104 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 C1orf43Q9BWL3 253 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-202ENST00000394943 PRSS1P07477 247 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 C2orf88Q9BSF0 95 aa4.56□□□□□ -1.68
LIMA1-202ENST00000394943 C11orf86A6NJI1 115 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 COX6A2Q02221 97 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 LINC01545Q5VT33 79 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 CFAP161Q6P656 301 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 HIST3H2BBQ8N257 126 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 HERC2O95714 4834 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 TMEM262E9PQX1 116 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 Q8IZM0 81 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 UBE2WQ96B02 151 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 HSPB8Q9UJY1 196 aa4.55□□□□□ -1.68
LIMA1-202ENST00000394943 IGLV10-54A0A075B6I4 117 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 GAGE12HA6NDE8 117 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 SLPIP03973 132 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 C9orf163Q8N9P6 203 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 OPRPNQ99935 248 aaPredicted RBP4.54□□□□□ -1.68
LIMA1-202ENST00000394943 PRO1933Q9H354 126 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 IFITM10A6NMD0 228 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 CDK2AP2O75956 126 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 IFI27L1Q96BM0 104 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 VCX2Q9H322 139 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 PKIGQ9Y2B9 76 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 SFTA2Q6UW10 78 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 PET117Q6UWS5 81 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 Q6ZN92 141 aa4.54□□□□□ -1.68
LIMA1-202ENST00000394943 MRPL35Q9NZE8 188 aaKnown RBP4.54□□□□□ -1.68
LIMA1-202ENST00000394943 SMIM1B2RUZ4 78 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 USP17L23D6RBM5 183 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 F8VRH5 84 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 ZNF22P17026 224 aaPredicted RBP4.53□□□□□ -1.68
LIMA1-202ENST00000394943 RNASEKQ6P5S7 137 aaKnown RBP4.53□□□□□ -1.68
LIMA1-202ENST00000394943 LOC107984156A0A0G2JMH3 177 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 TMEM223A0PJW6 202 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 KRTAP10-2P60368 255 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 ARL17AQ8IVW1 177 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 M0R2N4 97 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 COX7A2LO14548 114 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 CXCL5P42830 114 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 BAGE3Q86Y29 109 aa4.53□□□□□ -1.68
LIMA1-202ENST00000394943 TRBV30A0A0K0K1B3 111 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 HSBP1O75506 76 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 LOC105371267A0A1B0GV96 52 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 LEPROTL1O95214 131 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 PLNP26678 52 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 SDIM1Q6ZPB5 146 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 PLA2G2DQ9UNK4 145 aa4.52□□□□□ -1.69
LIMA1-202ENST00000394943 IGKV2D-24A0A075B6R9 120 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 SYS1-DBNDD2H3BUS1 97 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 APOMO95445 188 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 ZNF625Q96I27 306 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-202ENST00000394943 EREGO14944 169 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 PMCHL1Q16048 86 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 HIST1H2BLQ99880 126 aa4.51□□□□□ -1.69
LIMA1-202ENST00000394943 CHTOPQ9Y3Y2 248 aaKnown RBP4.5□□□□□ -1.69
LIMA1-202ENST00000394943 IGLV5-37A0A075B6J1 123 aa4.5□□□□□ -1.69
LIMA1-202ENST00000394943 A0A0J9YXV3 536 aa4.5□□□□□ -1.69
LIMA1-202ENST00000394943 CDKN2A-AS1Q9UH64 79 aa4.5□□□□□ -1.69
LIMA1-202ENST00000394943 H0Y8G0 127 aa4.5□□□□□ -1.69
LIMA1-202ENST00000394943 FAM19A2Q8N3H0 131 aa4.5□□□□□ -1.69
LIMA1-202ENST00000394943 COX17Q14061 63 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 ZC2HC1BQ5TFG8 222 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 SPACA4Q8TDM5 124 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 FABP4P15090 132 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 DEFB104AQ8WTQ1 72 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 MAP1LC3CQ9BXW4 147 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 PLAC8Q9NZF1 115 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 C3orf79P0CE67 100 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 NMUP48645 174 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 Q9HAA7 133 aa4.49□□□□□ -1.69
LIMA1-202ENST00000394943 H3BRM9 83 aa4.48□□□□□ -1.69
LIMA1-202ENST00000394943 SCGB1D1O95968 90 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms