RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LRRC75A-AS1Q8N1F1 130 aa12.73□□□□□ -0.37
SQSTM1-202ENST00000389805 CHCHD7Q9BUK0 85 aa12.73□□□□□ -0.37
SQSTM1-202ENST00000389805 TIRAPP58753 221 aa12.73□□□□□ -0.37
SQSTM1-202ENST00000389805 SOSTDC1Q6X4U4 206 aa12.73□□□□□ -0.37
SQSTM1-202ENST00000389805 CIRBPQ14011 172 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-202ENST00000389805 C4orf3Q8WVX3 66 aa12.72□□□□□ -0.37
SQSTM1-202ENST00000389805 FAM218AQ96MZ4 157 aa12.72□□□□□ -0.37
SQSTM1-202ENST00000389805 DYNLRB2Q8TF09 96 aa12.72□□□□□ -0.37
SQSTM1-202ENST00000389805 LINC00526Q96FQ7 95 aa12.72□□□□□ -0.37
SQSTM1-202ENST00000389805 MAP6D1Q9H9H5 199 aa12.71□□□□□ -0.37
SQSTM1-202ENST00000389805 PEMTQ9UBM1 199 aa12.71□□□□□ -0.37
SQSTM1-202ENST00000389805 hADV29S1A0JD25 119 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 DEFB114Q30KQ6 69 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 TRAV13-1A0A0B4J241 112 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 NDUFA1O15239 70 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 CYSTM1Q9H1C7 97 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 ESM1Q9NQ30 184 aa12.7□□□□□ -0.38
SQSTM1-202ENST00000389805 DGAT2L7PQ6IED9 249 aa12.69□□□□□ -0.38
SQSTM1-202ENST00000389805 FAM19A5Q7Z5A7 132 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-202ENST00000389805 DNAJC9-AS1A6NH13 148 aa12.69□□□□□ -0.38
SQSTM1-202ENST00000389805 SDIM1Q6ZPB5 146 aa12.69□□□□□ -0.38
SQSTM1-202ENST00000389805 C22orf24Q9Y442 160 aa12.69□□□□□ -0.38
SQSTM1-202ENST00000389805 TIMM17BO60830 172 aa12.68□□□□□ -0.38
SQSTM1-202ENST00000389805 PIK3CD-AS1Q5SR53 167 aa12.68□□□□□ -0.38
SQSTM1-202ENST00000389805 COX7CP15954 63 aa12.68□□□□□ -0.38
SQSTM1-202ENST00000389805 PDZD2O15018 2839 aa12.68□□□□□ -0.38
SQSTM1-202ENST00000389805 XCL2Q9UBD3 114 aa12.67□□□□□ -0.38
SQSTM1-202ENST00000389805 IGKV3D-7A0A0C4DH55 119 aa12.66□□□□□ -0.38
SQSTM1-202ENST00000389805 BEAN1Q3B7T3 259 aa12.66□□□□□ -0.38
SQSTM1-202ENST00000389805 HELZ2Q9BYK8 2649 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-202ENST00000389805 IGHV3OR16-12A0A075B7B8 117 aa12.66□□□□□ -0.38
SQSTM1-202ENST00000389805 C5orf38Q86SI9 138 aa12.66□□□□□ -0.38
SQSTM1-202ENST00000389805 A8MTW9 85 aa12.65□□□□□ -0.38
SQSTM1-202ENST00000389805 PRIMA1Q86XR5 153 aa12.65□□□□□ -0.38
SQSTM1-202ENST00000389805 C2orf48Q96LS8 159 aa12.65□□□□□ -0.38
SQSTM1-202ENST00000389805 SETXQ7Z333 2677 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-202ENST00000389805 J3KT08 172 aa12.65□□□□□ -0.38
SQSTM1-202ENST00000389805 C9orf129Q5T035 196 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-202ENST00000389805 ODF3L2Q3SX64 289 aa12.64□□□□□ -0.39
SQSTM1-202ENST00000389805 A0A087WVE0 104 aa12.63□□□□□ -0.39
SQSTM1-202ENST00000389805 SMIM9A6NGZ8 99 aa12.63□□□□□ -0.39
SQSTM1-202ENST00000389805 TRACP01848 142 aa12.63□□□□□ -0.39
SQSTM1-202ENST00000389805 C11orf72Q8NBR9 251 aa12.63□□□□□ -0.39
SQSTM1-202ENST00000389805 KIR2DL5BQ8NHK3 375 aa12.63□□□□□ -0.39
SQSTM1-202ENST00000389805 HECTD1Q9ULT8 2610 aa12.62□□□□□ -0.39
SQSTM1-202ENST00000389805 LINC00242Q5T6M2 205 aa12.62□□□□□ -0.39
SQSTM1-202ENST00000389805 C14orf132Q9NPU4 83 aa12.62□□□□□ -0.39
SQSTM1-202ENST00000389805 CCL24O00175 119 aa12.61□□□□□ -0.39
SQSTM1-202ENST00000389805 MALP21145 153 aa12.61□□□□□ -0.39
SQSTM1-202ENST00000389805 ZNF415Q09FC8 603 aa12.61□□□□□ -0.39
SQSTM1-202ENST00000389805 A0A1B0GX51 115 aa12.6□□□□□ -0.39
SQSTM1-202ENST00000389805 CXCL5P42830 114 aa12.6□□□□□ -0.39
SQSTM1-202ENST00000389805 C5orf47Q569G3 176 aa12.6□□□□□ -0.39
SQSTM1-202ENST00000389805 ATP5G1P05496 136 aa12.59□□□□□ -0.39
SQSTM1-202ENST00000389805 INAFM2P0DMQ5 153 aa12.59□□□□□ -0.39
SQSTM1-202ENST00000389805 SMIM1B2RUZ4 78 aa12.59□□□□□ -0.39
SQSTM1-202ENST00000389805 DNAL4O96015 105 aa12.59□□□□□ -0.39
SQSTM1-202ENST00000389805 TMEM86BQ8N661 226 aa12.59□□□□□ -0.39
SQSTM1-202ENST00000389805 INSP01308 110 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 IGLV5-45A0A087WSX0 123 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 IGLV5-39A0A0G2JS06 123 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 ATOX1O00244 68 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 CRYGAP11844 174 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 STHQ8IWL8 128 aa12.58□□□□□ -0.4
SQSTM1-202ENST00000389805 KRTAP1-1Q07627 177 aa12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 C1orf158Q8N1D5 194 aa12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 ANK3Q12955 4377 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 FASNP49327 2511 aaKnown RBP12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 A0A087WYN8 130 aa12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 WFDC10AQ9H1F0 79 aa12.57□□□□□ -0.4
SQSTM1-202ENST00000389805 DSCR8Q96T75 97 aa12.56□□□□□ -0.4
SQSTM1-202ENST00000389805 UNC79Q9P2D8 2635 aa12.56□□□□□ -0.4
SQSTM1-202ENST00000389805 HIVEP2P31629 2446 aa12.56□□□□□ -0.4
SQSTM1-202ENST00000389805 LINC01006Q8NI28 216 aa12.56□□□□□ -0.4
SQSTM1-202ENST00000389805 LINC00846Q9NV44 126 aa12.55□□□□□ -0.4
SQSTM1-202ENST00000389805 IGHV3-53P01767 116 aa12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 RPL18AQ02543 176 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 LINC00337Q8N6G1 96 aa12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 FN1P02751 2386 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 HIST1H4AP62805 103 aaKnown RBP12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 TRGV1A0A0A0MS02 117 aa12.54□□□□□ -0.4
SQSTM1-202ENST00000389805 CRPP02741 224 aa12.53□□□□□ -0.4
SQSTM1-202ENST00000389805 FAM222AQ5U5X8 452 aa12.53□□□□□ -0.4
SQSTM1-202ENST00000389805 SLPIP03973 132 aa12.53□□□□□ -0.4
SQSTM1-202ENST00000389805 TOMM7Q9P0U1 55 aa12.53□□□□□ -0.4
SQSTM1-202ENST00000389805 COPS9Q8WXC6 57 aa12.52□□□□□ -0.4
SQSTM1-202ENST00000389805 IGKV3OR2-268A0A0C4DH90 116 aa12.52□□□□□ -0.41
SQSTM1-202ENST00000389805 NCR3O14931 201 aa12.52□□□□□ -0.41
SQSTM1-202ENST00000389805 MIR7-3HGQ8N6C7 128 aa12.51□□□□□ -0.41
SQSTM1-202ENST00000389805 Q6ZTI0 123 aa12.51□□□□□ -0.41
SQSTM1-202ENST00000389805 SMR3AQ99954 134 aa12.51□□□□□ -0.41
SQSTM1-202ENST00000389805 DPH3Q96FX2 82 aa12.51□□□□□ -0.41
SQSTM1-202ENST00000389805 OXTP01178 125 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 OR13C6PQ8NH95 151 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 SMIM11BQ8TCY0 68 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 IGKV2-28A0A075B6P5 120 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 IGKV2D-28P01615 120 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 SND1-IT1Q9HBX3 110 aa12.5□□□□□ -0.41
SQSTM1-202ENST00000389805 PLA2G2AP14555 144 aa12.49□□□□□ -0.41
SQSTM1-202ENST00000389805 TRAV25A0A0B4J276 109 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms