RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 TMEM243Q9BU79 118 aa17.97■□□□□ 0.47
C9orf40-201ENST00000376854 WFDC10AQ9H1F0 79 aa17.97■□□□□ 0.47
C9orf40-201ENST00000376854 TRGV2A0A075B6R0 118 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 GAGE7O76087 117 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 GAGE12FP0CL80 117 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 GAGE12GP0CL81 117 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 GAGE12IP0CL82 117 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 COPS9Q8WXC6 57 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 C16orf74Q96GX8 76 aa17.96■□□□□ 0.47
C9orf40-201ENST00000376854 PLAC8L1A1L4L8 177 aa17.95■□□□□ 0.46
C9orf40-201ENST00000376854 CMC4P56277 68 aaPredicted RBP17.95■□□□□ 0.46
C9orf40-201ENST00000376854 SOSTDC1Q6X4U4 206 aa17.95■□□□□ 0.46
C9orf40-201ENST00000376854 HELZ2Q9BYK8 2649 aaKnown RBP17.95■□□□□ 0.46
C9orf40-201ENST00000376854 LINC01006Q8NI28 216 aa17.94■□□□□ 0.46
C9orf40-201ENST00000376854 CITED1Q99966 193 aa17.94■□□□□ 0.46
C9orf40-201ENST00000376854 NOTCH3Q9UM47 2321 aa17.94■□□□□ 0.46
C9orf40-201ENST00000376854 RPL35AP18077 110 aaKnown RBP17.94■□□□□ 0.46
C9orf40-201ENST00000376854 LOC100131303A0A0U1RQF7 123 aa17.93■□□□□ 0.46
C9orf40-201ENST00000376854 HERV-K104P63124 156 aa17.92■□□□□ 0.46
C9orf40-201ENST00000376854 SNCGO76070 127 aa17.91■□□□□ 0.46
C9orf40-201ENST00000376854 UNC79Q9P2D8 2635 aa17.9■□□□□ 0.46
C9orf40-201ENST00000376854 TRBV6-4A0A1B0GX49 114 aa17.89■□□□□ 0.46
C9orf40-201ENST00000376854 C19orf73Q9NVV2 129 aa17.89■□□□□ 0.45
C9orf40-201ENST00000376854 CRLF1O75462 422 aa17.88■□□□□ 0.45
C9orf40-201ENST00000376854 TRGV4A0A0C4DH28 118 aa17.88■□□□□ 0.45
C9orf40-201ENST00000376854 COX7A2LO14548 114 aa17.88■□□□□ 0.45
C9orf40-201ENST00000376854 IGLV1-51P01701 117 aa17.88■□□□□ 0.45
C9orf40-201ENST00000376854 SHISA2Q6UWI4 295 aa17.87■□□□□ 0.45
C9orf40-201ENST00000376854 FAM110AQ9BQ89 295 aa17.87■□□□□ 0.45
C9orf40-201ENST00000376854 RNASE1P07998 156 aaKnown RBP17.87■□□□□ 0.45
C9orf40-201ENST00000376854 CSNK1G2-AS1Q8NCQ2 148 aa17.87■□□□□ 0.45
C9orf40-201ENST00000376854 OVOL2Q9BRP0 275 aa17.87■□□□□ 0.45
C9orf40-201ENST00000376854 PLA2G2AP14555 144 aa17.86■□□□□ 0.45
C9orf40-201ENST00000376854 C16orf95Q9H693 158 aa17.86■□□□□ 0.45
C9orf40-201ENST00000376854 GAGE2BQ13066 116 aa17.86■□□□□ 0.45
C9orf40-201ENST00000376854 GAGE2EQ4V326 116 aa17.86■□□□□ 0.45
C9orf40-201ENST00000376854 GAGE2DQ9UEU5 116 aa17.86■□□□□ 0.45
C9orf40-201ENST00000376854 GAGE6Q13070 117 aa17.84■□□□□ 0.45
C9orf40-201ENST00000376854 DEFB121Q5J5C9 76 aa17.84■□□□□ 0.45
C9orf40-201ENST00000376854 ANAPC13Q9BS18 74 aa17.84■□□□□ 0.45
C9orf40-201ENST00000376854 TRAV26-1A0A087WT03 109 aa17.83■□□□□ 0.45
C9orf40-201ENST00000376854 C2CD3Q4AC94 2353 aa17.83■□□□□ 0.44
C9orf40-201ENST00000376854 C15orf53Q8NAA6 179 aa17.83■□□□□ 0.44
C9orf40-201ENST00000376854 IGKV3OR2-268A0A0C4DH90 116 aa17.82■□□□□ 0.44
C9orf40-201ENST00000376854 COX7B2Q8TF08 81 aa17.82■□□□□ 0.44
C9orf40-201ENST00000376854 PPDPFQ9H3Y8 114 aa17.81■□□□□ 0.44
C9orf40-201ENST00000376854 FASNP49327 2511 aaKnown RBP17.81■□□□□ 0.44
C9orf40-201ENST00000376854 FHL2Q14192 279 aa17.8■□□□□ 0.44
C9orf40-201ENST00000376854 IGLV4-60A0A075B6I1 120 aa17.8■□□□□ 0.44
C9orf40-201ENST00000376854 TRBV6-8A0A0A6YYG3 113 aa17.8■□□□□ 0.44
C9orf40-201ENST00000376854 TOMM7Q9P0U1 55 aa17.8■□□□□ 0.44
C9orf40-201ENST00000376854 KMT2BQ9UMN6 2715 aaPredicted RBP17.79■□□□□ 0.44
C9orf40-201ENST00000376854 FAM240AA0A1B0GVK7 77 aa17.79■□□□□ 0.44
C9orf40-201ENST00000376854 SMR3AQ99954 134 aa17.78■□□□□ 0.44
C9orf40-201ENST00000376854 CHCHD5Q9BSY4 110 aa17.78■□□□□ 0.44
C9orf40-201ENST00000376854 J3QKU1 62 aa17.77■□□□□ 0.44
C9orf40-201ENST00000376854 MIR7-3HGQ8N6C7 128 aa17.77■□□□□ 0.43
C9orf40-201ENST00000376854 Q6Q795 121 aa17.76■□□□□ 0.43
C9orf40-201ENST00000376854 TTC32Q5I0X7 151 aa17.75■□□□□ 0.43
C9orf40-201ENST00000376854 TRACP01848 142 aa17.75■□□□□ 0.43
C9orf40-201ENST00000376854 TRAV13-2A0A0B4J235 113 aa17.74■□□□□ 0.43
C9orf40-201ENST00000376854 NDUFV3P56181 108 aaKnown RBP17.73■□□□□ 0.43
C9orf40-201ENST00000376854 MRPL23Q16540 153 aaKnown RBP17.73■□□□□ 0.43
C9orf40-201ENST00000376854 IGHV3OR16-9A0A0B4J2B5 98 aa17.73■□□□□ 0.43
C9orf40-201ENST00000376854 PF4P02776 101 aa17.73■□□□□ 0.43
C9orf40-201ENST00000376854 HILS1P60008 231 aa17.73■□□□□ 0.43
C9orf40-201ENST00000376854 CRPP02741 224 aa17.72■□□□□ 0.43
C9orf40-201ENST00000376854 FAM218AQ96MZ4 157 aa17.72■□□□□ 0.43
C9orf40-201ENST00000376854 NHLRC4P0CG21 123 aaPredicted RBP17.71■□□□□ 0.43
C9orf40-201ENST00000376854 LINC00158P58513 81 aa17.71■□□□□ 0.43
C9orf40-201ENST00000376854 SND1-IT1Q9HBX3 110 aa17.71■□□□□ 0.43
C9orf40-201ENST00000376854 DEFB130BP0DP73 79 aa17.71■□□□□ 0.43
C9orf40-201ENST00000376854 DEFB130AP0DP74 79 aa17.71■□□□□ 0.43
C9orf40-201ENST00000376854 FAM222AQ5U5X8 452 aa17.71■□□□□ 0.43
C9orf40-201ENST00000376854 LINC00337Q8N6G1 96 aa17.7■□□□□ 0.42
C9orf40-201ENST00000376854 HECTD1Q9ULT8 2610 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 GCN1Q92616 2671 aaKnown RBP17.69■□□□□ 0.42
C9orf40-201ENST00000376854 HIVEP2P31629 2446 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 IGKV2-28A0A075B6P5 120 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 A0A087WZ39 114 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 IGKV2D-28P01615 120 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 BAALC-AS2P0C853 105 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 RPL28P46779 137 aaKnown RBP17.69■□□□□ 0.42
C9orf40-201ENST00000376854 KRTAP10-3P60369 221 aa17.69■□□□□ 0.42
C9orf40-201ENST00000376854 C5orf38Q86SI9 138 aa17.68■□□□□ 0.42
C9orf40-201ENST00000376854 LINC00959A0A1B0GUT2 108 aa17.65■□□□□ 0.42
C9orf40-201ENST00000376854 IBA57-AS1B1ANH7 110 aa17.65■□□□□ 0.42
C9orf40-201ENST00000376854 ACYP1P07311 99 aa17.65■□□□□ 0.42
C9orf40-201ENST00000376854 KIR2DL5BQ8NHK3 375 aa17.65■□□□□ 0.42
C9orf40-201ENST00000376854 CCL18P55774 89 aa17.64■□□□□ 0.41
C9orf40-201ENST00000376854 VWFP04275 2813 aa17.64■□□□□ 0.41
C9orf40-201ENST00000376854 GYPEP15421 78 aa17.63■□□□□ 0.41
C9orf40-201ENST00000376854 C22orf24Q9Y442 160 aa17.63■□□□□ 0.41
C9orf40-201ENST00000376854 NOTCH2Q04721 2471 aa17.63■□□□□ 0.41
C9orf40-201ENST00000376854 PFN2P35080 140 aa17.63■□□□□ 0.41
C9orf40-201ENST00000376854 Q9HAA7 133 aa17.63■□□□□ 0.41
C9orf40-201ENST00000376854 LINC00612Q8N6U2 182 aa17.61■□□□□ 0.41
C9orf40-201ENST00000376854 SMIM11BQ8TCY0 68 aa17.61■□□□□ 0.41
C9orf40-201ENST00000376854 SVIPQ8NHG7 77 aa17.59■□□□□ 0.41
C9orf40-201ENST00000376854 XCL1P47992 114 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms