RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 TEX15Q9BXT5 2789 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 IGLV5-39A0A0G2JS06 123 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 SMIM1B2RUZ4 78 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 BAALC-AS2P0C853 105 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 SMCR5Q8TEV8 140 aa7.95□□□□□ -1.14
CCDC40-203ENST00000374877 PIK3CD-AS1Q5SR53 167 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 COPS9Q8WXC6 57 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 XCL2Q9UBD3 114 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 INSP01308 110 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 SHISA2Q6UWI4 295 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 DYNLRB2Q8TF09 96 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 FAM110AQ9BQ89 295 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 MAP6D1Q9H9H5 199 aa7.94□□□□□ -1.14
CCDC40-203ENST00000374877 TRGV1A0A0A0MS02 117 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 INAFM1C9JVW0 142 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 RS1O15537 224 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 HIST2H2BDQ6DRA6 164 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 ZNF469Q96JG9 3925 aaPredicted RBP7.93□□□□□ -1.14
CCDC40-203ENST00000374877 FAM218AQ96MZ4 157 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 Q9HAA7 133 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 TLN2Q9Y4G6 2542 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 WNK1Q9H4A3 2382 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 CUBNO60494 3623 aa7.93□□□□□ -1.14
CCDC40-203ENST00000374877 LINC00643Q86TS7 51 aa7.92□□□□□ -1.14
CCDC40-203ENST00000374877 SETD2Q9BYW2 2564 aaPredicted RBP7.92□□□□□ -1.14
CCDC40-203ENST00000374877 BEAN1Q3B7T3 259 aa7.92□□□□□ -1.14
CCDC40-203ENST00000374877 A8MTW9 85 aa7.92□□□□□ -1.14
CCDC40-203ENST00000374877 TRACP01848 142 aa7.92□□□□□ -1.14
CCDC40-203ENST00000374877 GAGE2AQ6NT46 116 aa7.92□□□□□ -1.14
CCDC40-203ENST00000374877 RPL36AP83881 106 aaKnown RBP7.91□□□□□ -1.14
CCDC40-203ENST00000374877 RPL36ALQ969Q0 106 aaKnown RBP7.91□□□□□ -1.14
CCDC40-203ENST00000374877 IMUPQ9GZP8 106 aa7.91□□□□□ -1.14
CCDC40-203ENST00000374877 OTOGQ6ZRI0 2925 aa7.91□□□□□ -1.14
CCDC40-203ENST00000374877 C9orf153Q5TBE3 101 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 C4orf3Q8WVX3 66 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 PEMTQ9UBM1 199 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 NTM-AS1Q6ZSK4 140 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 LINC01006Q8NI28 216 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 TOMM7Q9P0U1 55 aa7.9□□□□□ -1.14
CCDC40-203ENST00000374877 IGKV3OR2-268A0A0C4DH90 116 aa7.9□□□□□ -1.15
CCDC40-203ENST00000374877 CRPP02741 224 aa7.9□□□□□ -1.15
CCDC40-203ENST00000374877 TMEM126AQ9H061 195 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 ACANP16112 2415 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 HIVEP2P31629 2446 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 NOTCH2Q04721 2471 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 F5H768 121 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 UBE2L6O14933 153 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 CDC42SE2Q9NRR3 84 aa7.89□□□□□ -1.15
CCDC40-203ENST00000374877 K7EQD1 137 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 INAFM2P0DMQ5 153 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 Q6ZTI0 123 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 C22orf24Q9Y442 160 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 MXRA5Q9NR99 2828 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 MIR7-3HGQ8N6C7 128 aa7.88□□□□□ -1.15
CCDC40-203ENST00000374877 DNAL4O96015 105 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 MALP21145 153 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 STHQ8IWL8 128 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 TRAV13-2A0A0B4J235 113 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 C3orf22Q8N5N4 141 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 SND1-IT1Q9HBX3 110 aa7.87□□□□□ -1.15
CCDC40-203ENST00000374877 CSDC2Q9Y534 153 aaKnown RBP7.87□□□□□ -1.15
CCDC40-203ENST00000374877 SONP18583 2426 aaKnown RBP7.87□□□□□ -1.15
CCDC40-203ENST00000374877 DEFB114Q30KQ6 69 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 C1orf158Q8N1D5 194 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 LINC00337Q8N6G1 96 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 LINC00158P58513 81 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 FAM222AQ5U5X8 452 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 SDIM1Q6ZPB5 146 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 FAM19A3Q7Z5A8 133 aa7.86□□□□□ -1.15
CCDC40-203ENST00000374877 TRBV10-1A0A0K0K1A3 114 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 UQCRQO14949 82 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 TMEM243Q9BU79 118 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 JMJD1CQ15652 2540 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 RPL28P46779 137 aaKnown RBP7.85□□□□□ -1.15
CCDC40-203ENST00000374877 ODF3L2Q3SX64 289 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 A0A087WYN8 130 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 COX7B2Q8TF08 81 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 C14orf132Q9NPU4 83 aa7.85□□□□□ -1.15
CCDC40-203ENST00000374877 PF4P02776 101 aa7.84□□□□□ -1.15
CCDC40-203ENST00000374877 NOP10Q9NPE3 64 aaKnown RBP7.84□□□□□ -1.15
CCDC40-203ENST00000374877 IGKV2-28A0A075B6P5 120 aa7.84□□□□□ -1.15
CCDC40-203ENST00000374877 IGKV2D-28P01615 120 aa7.84□□□□□ -1.15
CCDC40-203ENST00000374877 ATP5G1P05496 136 aa7.84□□□□□ -1.15
CCDC40-203ENST00000374877 SMIM11BQ8TCY0 68 aa7.84□□□□□ -1.15
CCDC40-203ENST00000374877 KLK5Q9Y337 293 aaPredicted RBP7.84□□□□□ -1.15
CCDC40-203ENST00000374877 LOC100131303A0A0U1RQF7 123 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 CXCL5P42830 114 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 C9orf129Q5T035 196 aaKnown RBP7.83□□□□□ -1.16
CCDC40-203ENST00000374877 C5orf38Q86SI9 138 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 C11orf44Q8N8P7 122 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 PPDPFQ9H3Y8 114 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 PFN2P35080 140 aa7.83□□□□□ -1.16
CCDC40-203ENST00000374877 OR13C6PQ8NH95 151 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 LINC00526Q96FQ7 95 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 TRGV2A0A075B6R0 118 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 IGKV3D-7A0A0C4DH55 119 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 A0A1W2PRX2 142 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 CYSRT1A8MQ03 144 aa7.82□□□□□ -1.16
CCDC40-203ENST00000374877 IL17DQ8TAD2 202 aa7.81□□□□□ -1.16
CCDC40-203ENST00000374877 OVOL2Q9BRP0 275 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms