RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 Q6ZS46 218 aa8.4□□□□□ -1.06
PTPRF-203ENST00000372407 LINC00482Q8N8I6 264 aa8.4□□□□□ -1.06
PTPRF-203ENST00000372407 UBE2D4Q9Y2X8 147 aa8.4□□□□□ -1.06
PTPRF-203ENST00000372407 ZNF702PQ9H963 129 aa8.4□□□□□ -1.07
PTPRF-203ENST00000372407 FLNBO75369 2602 aaKnown RBP8.4□□□□□ -1.07
PTPRF-203ENST00000372407 C3orf22Q8N5N4 141 aa8.39□□□□□ -1.07
PTPRF-203ENST00000372407 CCKP06307 115 aa8.39□□□□□ -1.07
PTPRF-203ENST00000372407 SCXQ7RTU7 201 aa8.39□□□□□ -1.07
PTPRF-203ENST00000372407 A0A096LNI7 61 aa8.39□□□□□ -1.07
PTPRF-203ENST00000372407 URB1-AS1Q96HZ7 61 aa8.39□□□□□ -1.07
PTPRF-203ENST00000372407 IGIPA6NJ69 53 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 Q6ZQY7 126 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 FAM236DA0A1B0GTK5 79 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 INAFM1C9JVW0 142 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 FAM236CP0DP71 79 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 MRGPRG-AS1Q2M3A8 158 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 IL17DQ8TAD2 202 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 FAM19A1Q7Z5A9 133 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 LINC01006Q8NI28 216 aa8.38□□□□□ -1.07
PTPRF-203ENST00000372407 F8P00451 2351 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 BRCA2P51587 3418 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 UBE2D1P51668 147 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 LINC00959A0A1B0GUT2 108 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 IGKV4-1P06312 121 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 HILS1P60008 231 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 POM121L12Q8N7R1 296 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 BRK1Q8WUW1 75 aa8.37□□□□□ -1.07
PTPRF-203ENST00000372407 USP17L23D6RBM5 183 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 TRANK1O15050 2925 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 C1orf158Q8N1D5 194 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 SERP2Q8N6R1 65 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 PRM2P04554 102 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 KRTAP10-9P60411 292 aa8.36□□□□□ -1.07
PTPRF-203ENST00000372407 A0A087WZ39 114 aa8.35□□□□□ -1.07
PTPRF-203ENST00000372407 XGP55808 180 aa8.35□□□□□ -1.07
PTPRF-203ENST00000372407 A0A0C4DFX4 3053 aa8.35□□□□□ -1.07
PTPRF-203ENST00000372407 LY6G6DO95868 133 aa8.35□□□□□ -1.07
PTPRF-203ENST00000372407 SMIM11BQ8TCY0 68 aa8.35□□□□□ -1.07
PTPRF-203ENST00000372407 LOC100131303A0A0U1RQF7 123 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 CDC42SE2Q9NRR3 84 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 UBE2D3P61077 147 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 UBE2D2P62837 147 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 LELP1Q5T871 98 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 WFDC10AQ9H1F0 79 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 LINC00526Q96FQ7 95 aa8.34□□□□□ -1.07
PTPRF-203ENST00000372407 LINC00242Q5T6M2 205 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 M0R378 163 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 C18orf65Q6ZTR6 163 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 KIR2DL5BQ8NHK3 375 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 C5orf42Q9H799 3197 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 MUC7Q8TAX7 377 aa8.33□□□□□ -1.08
PTPRF-203ENST00000372407 COX8CQ7Z4L0 72 aa8.32□□□□□ -1.08
PTPRF-203ENST00000372407 FAM19A5Q7Z5A7 132 aaPredicted RBP8.32□□□□□ -1.08
PTPRF-203ENST00000372407 PTPRBP23467 1997 aa8.32□□□□□ -1.08
PTPRF-203ENST00000372407 KPRPQ5T749 579 aaPredicted RBP8.32□□□□□ -1.08
PTPRF-203ENST00000372407 SHISA2Q6UWI4 295 aa8.32□□□□□ -1.08
PTPRF-203ENST00000372407 FAM19A3Q7Z5A8 133 aa8.32□□□□□ -1.08
PTPRF-203ENST00000372407 Q8IZM0 81 aa8.32□□□□□ -1.08
PTPRF-203ENST00000372407 NDUFC1O43677 76 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 NDUFA7O95182 113 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 C3orf84H3BNL1 204 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 AVPP01185 164 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 IGKV2-28A0A075B6P5 120 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 IGKV2D-28P01615 120 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 SEC61GP60059 68 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 COX17Q14061 63 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 ODF3L2Q3SX64 289 aa8.31□□□□□ -1.08
PTPRF-203ENST00000372407 IGLV4-69A0A075B6H9 119 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 TRAV10A0A0B4J240 114 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 COX7CP15954 63 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 MPLKIPQ8TAP9 179 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 DHRS4-AS1Q9P1J3 65 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.3□□□□□ -1.08
PTPRF-203ENST00000372407 FAM240AA0A1B0GVK7 77 aa8.3□□□□□ -1.08
PTPRF-203ENST00000372407 CRIP2P52943 208 aaPredicted RBP8.3□□□□□ -1.08
PTPRF-203ENST00000372407 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.3□□□□□ -1.08
PTPRF-203ENST00000372407 MUC4Q99102 2169 aa8.29□□□□□ -1.08
PTPRF-203ENST00000372407 NDUFC2-KCTD14E9PQ53 114 aa8.29□□□□□ -1.08
PTPRF-203ENST00000372407 ZNF73O43830 326 aaPredicted RBP8.28□□□□□ -1.08
PTPRF-203ENST00000372407 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.28□□□□□ -1.08
PTPRF-203ENST00000372407 AGRNO00468 2067 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 A0A096LNJ9 63 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 SMIM1B2RUZ4 78 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 SPTSSBQ8NFR3 76 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 SVIPQ8NHG7 77 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 POLQO75417 2590 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 Q6Q795 121 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 WFDC10BQ8IUB3 73 aa8.28□□□□□ -1.08
PTPRF-203ENST00000372407 CYSRT1A8MQ03 144 aa8.27□□□□□ -1.09
PTPRF-203ENST00000372407 PRUNE2Q8WUY3 3088 aa8.27□□□□□ -1.09
PTPRF-203ENST00000372407 ATP5EP56381 51 aaPredicted RBP8.27□□□□□ -1.09
PTPRF-203ENST00000372407 NTM-AS1Q6ZSK4 140 aa8.27□□□□□ -1.09
PTPRF-203ENST00000372407 Q6JHZ5 121 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 CLUHP3Q96NS8 147 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 CASC2Q6XLA1 102 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 A0A1W2PPR1 153 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 CCDC179H3BU77 68 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 BRI3O95415 125 aa8.26□□□□□ -1.09
PTPRF-203ENST00000372407 EDN2P20800 178 aa8.25□□□□□ -1.09
PTPRF-203ENST00000372407 RPL28P46779 137 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms