RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TRBV27A0A0K0K1C4 114 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 NUPR2A6NF83 97 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 M0QXV9 152 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 PTH2Q96A98 100 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 IGLV4-60A0A075B6I1 120 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 CYSLTR1Q9Y271 337 aa6.34□□□□□ -1.39
USP4-202ENST00000351842 PRSS29PA6NIE9 313 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 H3BRM9 83 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 ANAPC13Q9BS18 74 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 CASC10Q5T4H9 136 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 Q6ZUT4 128 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 LINC00269Q8N2A0 174 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 SPINK8P0C7L1 97 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 RAB37Q96AX2 223 aa6.33□□□□□ -1.4
USP4-202ENST00000351842 IGHV3-64A0A075B6Q5 118 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 CHCHD7Q9BUK0 85 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 HIGD1BQ9P298 99 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 TRBV6-5A0A0K0K1A5 114 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 LECT2O14960 151 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 ORMDL2Q53FV1 153 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 TMEM97Q5BJF2 176 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 C20orf203Q8NBC4 194 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 IFI27L1Q96BM0 104 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 VCX2Q9H322 139 aa6.32□□□□□ -1.4
USP4-202ENST00000351842 A0A1W2PPM0 123 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 A6NDN8 102 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 XCL1P47992 114 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 FABP2P12104 132 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 C15orf53Q8NAA6 179 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 TMEM101Q96IK0 257 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 Q9H8V8 135 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 APLNQ9ULZ1 77 aa6.31□□□□□ -1.4
USP4-202ENST00000351842 KMT2CQ8NEZ4 4911 aaKnown RBP6.3□□□□□ -1.4
USP4-202ENST00000351842 SPANXB1Q9NS25 103 aaPredicted RBP6.3□□□□□ -1.4
USP4-202ENST00000351842 DNAH10Q8IVF4 4471 aa6.3□□□□□ -1.4
USP4-202ENST00000351842 IGKV2D-24A0A075B6R9 120 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 LELP1Q5T871 98 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 PPDPFQ9H3Y8 114 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 CRPP02741 224 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 WFDC2Q14508 124 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 C5orf47Q569G3 176 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 SH2D6Q7Z4S9 175 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 K7EMI3 77 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 MT-ATP8P03928 68 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 ETDBQ3ZM63 59 aa6.29□□□□□ -1.4
USP4-202ENST00000351842 LINC00526Q96FQ7 95 aa6.28□□□□□ -1.4
USP4-202ENST00000351842 ATP5LO75964 103 aa6.28□□□□□ -1.4
USP4-202ENST00000351842 FUSP35637 526 aaKnown RBP eCLIP6.28□□□□□ -1.4
USP4-202ENST00000351842 C5orf38Q86SI9 138 aa6.28□□□□□ -1.4
USP4-202ENST00000351842 UBE2D4Q9Y2X8 147 aa6.28□□□□□ -1.4
USP4-202ENST00000351842 TRAV12-1A0A0B4J245 112 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 A0A0J9YXV3 536 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 IGLV4-3A0A075B6K6 122 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 TMEM170BQ5T4T1 132 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 TOMM7Q9P0U1 55 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 HYDINQ4G0P3 5121 aa6.27□□□□□ -1.41
USP4-202ENST00000351842 REG3AQ06141 175 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 TOMM6Q96B49 74 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 TMEM141Q96I45 108 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 KRTAP1-5Q9BYS1 174 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 BAALCQ8WXS3 180 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 TM2D2Q9BX73 214 aa6.26□□□□□ -1.41
USP4-202ENST00000351842 MRPL35Q9NZE8 188 aaKnown RBP6.26□□□□□ -1.41
USP4-202ENST00000351842 PSCAO43653 123 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 TAL2Q16559 108 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 CDIP1Q9H305 208 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 F8W1H4 67 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 IGKCP01834 107 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 PCP2Q8IVA1 136 aa6.25□□□□□ -1.41
USP4-202ENST00000351842 CSDC2Q9Y534 153 aaKnown RBP6.25□□□□□ -1.41
USP4-202ENST00000351842 IGKV2D-26A0A0A0MRZ7 120 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 IGIPA6NJ69 53 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 H3BNG1 76 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 CCDC179H3BU77 68 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 XGP55808 180 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 CDC42SE2Q9NRR3 84 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 DPM2O94777 84 aa6.24□□□□□ -1.41
USP4-202ENST00000351842 CHAC1Q9BUX1 264 aa6.23□□□□□ -1.41
USP4-202ENST00000351842 COX6A2Q02221 97 aa6.23□□□□□ -1.41
USP4-202ENST00000351842 HIGD2BQ4VC39 106 aa6.23□□□□□ -1.41
USP4-202ENST00000351842 A0A0U1RRA0 63 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 A0A1B0GWB2 263 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 PLNP26678 52 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 PMVKQ15126 192 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 LINC00476Q8WZB0 136 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 C1orf43Q9BWL3 253 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.22□□□□□ -1.41
USP4-202ENST00000351842 TRAV8-3A0A0A6YYJ7 113 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 CHCHD10Q8WYQ3 142 aaPredicted RBP6.22□□□□□ -1.41
USP4-202ENST00000351842 ZNF625Q96I27 306 aaPredicted RBP6.22□□□□□ -1.41
USP4-202ENST00000351842 SPANXA1Q9NS26 97 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 DNAH1Q9P2D7 4330 aa6.22□□□□□ -1.41
USP4-202ENST00000351842 C11orf86A6NJI1 115 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 C3orf84H3BNL1 204 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 SMIM13P0DJ93 91 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 MALP21145 153 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 ENHOQ6UWT2 76 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 TTTY13Q9BZ97 58 aa6.21□□□□□ -1.41
USP4-202ENST00000351842 LINC01549A6NIU2 74 aa6.21□□□□□ -1.42
USP4-202ENST00000351842 FAM104AQ969W3 186 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms