RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 LY6G6DO95868 133 aa11.42□□□□□ -0.58
HMGA1-202ENST00000347617 CSDC2Q9Y534 153 aaKnown RBP11.42□□□□□ -0.58
HMGA1-202ENST00000347617 J3KT08 172 aa11.41□□□□□ -0.58
HMGA1-202ENST00000347617 CRYGAP11844 174 aa11.41□□□□□ -0.58
HMGA1-202ENST00000347617 HIST1H4AP62805 103 aaKnown RBP11.41□□□□□ -0.58
HMGA1-202ENST00000347617 RPS28P62857 69 aaKnown RBP11.41□□□□□ -0.58
HMGA1-202ENST00000347617 NACAE9PAV3 2078 aa11.41□□□□□ -0.58
HMGA1-202ENST00000347617 IGHV3-73A0A0B4J1V6 119 aa11.4□□□□□ -0.58
HMGA1-202ENST00000347617 RS1O15537 224 aa11.4□□□□□ -0.58
HMGA1-202ENST00000347617 RPL28P46779 137 aaKnown RBP11.4□□□□□ -0.58
HMGA1-202ENST00000347617 LINC01006Q8NI28 216 aa11.4□□□□□ -0.58
HMGA1-202ENST00000347617 SONP18583 2426 aaKnown RBP11.4□□□□□ -0.58
HMGA1-202ENST00000347617 PROK1P58294 105 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 HIST2H2BDQ6DRA6 164 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 ZNF625Q96I27 306 aaPredicted RBP11.39□□□□□ -0.59
HMGA1-202ENST00000347617 AKAP9Q99996 3911 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 ACANP16112 2415 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 MALP21145 153 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 LINC00242Q5T6M2 205 aa11.39□□□□□ -0.59
HMGA1-202ENST00000347617 HECTD1Q9ULT8 2610 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 MYO9AB2RTY4 2548 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 IGHV3OR16-12A0A075B7B8 117 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 SMIM1B2RUZ4 78 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 RBMY1A1P0DJD3 496 aaKnown RBP11.38□□□□□ -0.59
HMGA1-202ENST00000347617 RBMY1CP0DJD4 496 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 RBMY1FQ15415 496 aaKnown RBP11.38□□□□□ -0.59
HMGA1-202ENST00000347617 PRIMA1Q86XR5 153 aa11.38□□□□□ -0.59
HMGA1-202ENST00000347617 LINC00694P0DN24 101 aa11.37□□□□□ -0.59
HMGA1-202ENST00000347617 SLURP1P55000 103 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 SOSTDC1Q6X4U4 206 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 C18orf65Q6ZTR6 163 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 SMR3AQ99954 134 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 H0YGX0 51 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 CRPP02741 224 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 Q6JHZ5 121 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 GAGE2AQ6NT46 116 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 Q6ZSN1 163 aa11.36□□□□□ -0.59
HMGA1-202ENST00000347617 HIVEP2P31629 2446 aa11.35□□□□□ -0.59
HMGA1-202ENST00000347617 MAST4O15021 2626 aa11.35□□□□□ -0.59
HMGA1-202ENST00000347617 COX6A2Q02221 97 aa11.35□□□□□ -0.59
HMGA1-202ENST00000347617 C2orf48Q96LS8 159 aa11.35□□□□□ -0.59
HMGA1-202ENST00000347617 C22orf24Q9Y442 160 aa11.35□□□□□ -0.59
HMGA1-202ENST00000347617 KNCNA6PVL3 124 aa11.34□□□□□ -0.59
HMGA1-202ENST00000347617 DEFB136Q30KP8 78 aa11.34□□□□□ -0.59
HMGA1-202ENST00000347617 KHDC1LQ5JSQ8 128 aa11.34□□□□□ -0.59
HMGA1-202ENST00000347617 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.34□□□□□ -0.59
HMGA1-202ENST00000347617 TRAV25A0A0B4J276 109 aa11.33□□□□□ -0.59
HMGA1-202ENST00000347617 TRBV10-1A0A0K0K1A3 114 aa11.33□□□□□ -0.59
HMGA1-202ENST00000347617 DNAL4O96015 105 aa11.33□□□□□ -0.59
HMGA1-202ENST00000347617 RPL18AQ02543 176 aaKnown RBP11.33□□□□□ -0.59
HMGA1-202ENST00000347617 C5orf47Q569G3 176 aa11.33□□□□□ -0.59
HMGA1-202ENST00000347617 C11orf72Q8NBR9 251 aa11.33□□□□□ -0.59
HMGA1-202ENST00000347617 ANK3Q12955 4377 aaKnown RBP11.33□□□□□ -0.6
HMGA1-202ENST00000347617 CCL24O00175 119 aa11.32□□□□□ -0.6
HMGA1-202ENST00000347617 C3orf56Q8N813 242 aa11.32□□□□□ -0.6
HMGA1-202ENST00000347617 F5H768 121 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 INSP01308 110 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 HTN1P15515 57 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 DEFB131AP59861 70 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 TMEM258P61165 79 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 OR13C6PQ8NH95 151 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 OBSCN-AS1Q96MR7 158 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 IGHV3-38A0A0C4DH36 116 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 RPL36AP83881 106 aaKnown RBP11.31□□□□□ -0.6
HMGA1-202ENST00000347617 DEFB114Q30KQ6 69 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 RPL36ALQ969Q0 106 aaKnown RBP11.31□□□□□ -0.6
HMGA1-202ENST00000347617 FAM218AQ96MZ4 157 aa11.31□□□□□ -0.6
HMGA1-202ENST00000347617 RBMY1BA6NDE4 496 aaKnown RBP11.28□□□□□ -0.6
HMGA1-202ENST00000347617 RBMY1EA6NEQ0 496 aaKnown RBP11.28□□□□□ -0.6
HMGA1-202ENST00000347617 RBMY1DP0C7P1 496 aaKnown RBP11.28□□□□□ -0.6
HMGA1-202ENST00000347617 SERP2Q8N6R1 65 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 DYNLRB2Q8TF09 96 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 CDC42SE2Q9NRR3 84 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 Q9UF83 564 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 NOTCH2Q04721 2471 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 S100A7L2Q5SY68 101 aa11.28□□□□□ -0.6
HMGA1-202ENST00000347617 KLK5Q9Y337 293 aaPredicted RBP11.28□□□□□ -0.6
HMGA1-202ENST00000347617 OTOGQ6ZRI0 2925 aa11.27□□□□□ -0.6
HMGA1-202ENST00000347617 A0A0U1RRA0 63 aa11.27□□□□□ -0.61
HMGA1-202ENST00000347617 INAFM1C9JVW0 142 aa11.27□□□□□ -0.61
HMGA1-202ENST00000347617 MTORP42345 2549 aa11.27□□□□□ -0.61
HMGA1-202ENST00000347617 K7EQD1 137 aa11.26□□□□□ -0.61
HMGA1-202ENST00000347617 SND1-IT1Q9HBX3 110 aa11.26□□□□□ -0.61
HMGA1-202ENST00000347617 TRAV13-1A0A0B4J241 112 aa11.25□□□□□ -0.61
HMGA1-202ENST00000347617 SMIM9A6NGZ8 99 aa11.25□□□□□ -0.61
HMGA1-202ENST00000347617 CMC4P56277 68 aaPredicted RBP11.25□□□□□ -0.61
HMGA1-202ENST00000347617 ATP5EP2Q5VTU8 51 aa11.25□□□□□ -0.61
HMGA1-202ENST00000347617 COX7B2Q8TF08 81 aa11.25□□□□□ -0.61
HMGA1-202ENST00000347617 C11orf44Q8N8P7 122 aa11.24□□□□□ -0.61
HMGA1-202ENST00000347617 IL17DQ8TAD2 202 aa11.24□□□□□ -0.61
HMGA1-202ENST00000347617 A0A1W2PRX2 142 aa11.23□□□□□ -0.61
HMGA1-202ENST00000347617 FAM19A5Q7Z5A7 132 aaPredicted RBP11.23□□□□□ -0.61
HMGA1-202ENST00000347617 LINC00337Q8N6G1 96 aa11.23□□□□□ -0.61
HMGA1-202ENST00000347617 MAP6D1Q9H9H5 199 aa11.23□□□□□ -0.61
HMGA1-202ENST00000347617 TMEM243Q9BU79 118 aa11.23□□□□□ -0.61
HMGA1-202ENST00000347617 Q9HAA7 133 aa11.23□□□□□ -0.61
HMGA1-202ENST00000347617 NF1P21359 2839 aa11.22□□□□□ -0.61
HMGA1-202ENST00000347617 hADV29S1A0JD25 119 aa11.22□□□□□ -0.61
HMGA1-202ENST00000347617 IBA57-AS1B1ANH7 110 aa11.22□□□□□ -0.61
HMGA1-202ENST00000347617 UBE2L6O14933 153 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms