RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 COX7A2LO14548 114 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 C9orf85Q96MD7 179 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 DPM3Q9P2X0 92 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 ZNF256Q9Y2P7 627 aaPredicted RBP4.05□□□□□ -1.76
CSDE1-202ENST00000339438 IGHG2P01859 326 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 PFN2P35080 140 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 HIST2H2BDQ6DRA6 164 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 SMR3AQ99954 134 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 TINCRA0A1B0GVN0 87 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 FAM223BA6NKX1 122 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 GNRH2O43555 120 aa4.05□□□□□ -1.76
CSDE1-202ENST00000339438 PPP1R17O96001 155 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 ECSCRQ19T08 205 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 LYPD5Q6UWN5 251 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 ESM1Q9NQ30 184 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 UBE2D4Q9Y2X8 147 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 LENEPQ9Y5L5 61 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 ODF3BA8MYP8 253 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 SOCS3O14543 225 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 TIMM17BO60830 172 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 COX6CP09669 75 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 RPL35AP18077 110 aaKnown RBP4.04□□□□□ -1.76
CSDE1-202ENST00000339438 Q6JHZ5 121 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 SOSTDC1Q6X4U4 206 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 SIRPDQ9H106 197 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 NACAE9PAV3 2078 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV1-58A0A0C4DH39 117 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 NDUFC2-KCTD14E9PQ53 114 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 VCYO14598 125 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 FAM223AQ8IWN6 122 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 VSIG2Q96IQ7 327 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 LINC00846Q9NV44 126 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 SORL1Q92673 2214 aa4.04□□□□□ -1.76
CSDE1-202ENST00000339438 F8P00451 2351 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 M0R1W7 72 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 MGPP08493 103 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 NPC2P61916 151 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 C20orf203Q8NBC4 194 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 USP17L23D6RBM5 183 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 M0QY20 66 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 MSMBP08118 114 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 SS18Q15532 418 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 HSPG2P98160 4391 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.03□□□□□ -1.76
CSDE1-202ENST00000339438 CCDC140Q96MF4 163 aa4.03□□□□□ -1.76
CSDE1-202ENST00000339438 IGHV3-66A0A0C4DH42 116 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 H3BUX3 64 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 H7BZZ5 65 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 LY6G6DO95868 133 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 DEFB1P60022 68 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 KPRPQ5T749 579 aaPredicted RBP4.02□□□□□ -1.77
CSDE1-202ENST00000339438 Q8N6K4 173 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 BAALC-AS2P0C853 105 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 NDUFA12Q9UI09 145 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 PHLDA3Q9Y5J5 127 aa4.02□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV3OR16-13A0A075B7E8 117 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV3-74A0A0B4J1X5 117 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 B4DSR2 109 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 G3V318 75 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 RPL28P46779 137 aaKnown RBP4.01□□□□□ -1.77
CSDE1-202ENST00000339438 CFHR3Q02985 330 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 C11orf44Q8N8P7 122 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 LINC00308Q8TCZ7 52 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 MDFIQ99750 246 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 RS1O15537 224 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 HILS1P60008 231 aa4.01□□□□□ -1.77
CSDE1-202ENST00000339438 ATRQ13535 2644 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGLV5-45A0A087WSX0 123 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV3-49A0A0A0MS15 119 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 TRAV21A0A0B4J279 112 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGKV3D-7A0A0C4DH55 119 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 NDUFC2O95298 119 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 SEC61GP60059 68 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 BLCAPP62952 87 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 A0A087WWL8 130 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 NDUFA1O15239 70 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV4-59P01825 116 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 ZNF625Q96I27 306 aaPredicted RBP4□□□□□ -1.77
CSDE1-202ENST00000339438 TRAV12-2A0A075B6T6 113 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV7-81A0A0B4J1V7 117 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 KLLNB2CW77 178 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 IGHV3-11P01762 117 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 RPL11P62913 178 aaKnown RBP4□□□□□ -1.77
CSDE1-202ENST00000339438 KHDC1LQ5JSQ8 128 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 SERP1Q9Y6X1 66 aa4□□□□□ -1.77
CSDE1-202ENST00000339438 TRAV12-3A0A0B4J271 114 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 SYNJ2BPP57105 145 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 ZNF415Q09FC8 603 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 DEFB112Q30KQ8 113 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 LINC01356Q8N9X3 169 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 IGKV3-7A0A075B6H7 116 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 TRBV12-3P01733 135 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 INAFM2P0DMQ5 153 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 Q9HAA7 133 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 FAM110DQ8TAY7 271 aaPredicted RBP3.99□□□□□ -1.77
CSDE1-202ENST00000339438 C2CD3Q4AC94 2353 aa3.99□□□□□ -1.77
CSDE1-202ENST00000339438 IGLV5-39A0A0G2JS06 123 aa3.98□□□□□ -1.77
CSDE1-202ENST00000339438 TMEM89A2RUT3 159 aa3.98□□□□□ -1.77
CSDE1-202ENST00000339438 ATP6V0E1O15342 81 aa3.98□□□□□ -1.77
CSDE1-202ENST00000339438 C15orf32Q32M92 178 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms