RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 A0A0J9YWU9 116 aa11.52□□□□□ -0.56
HCFC1-201ENST00000310441 SHISA2Q6UWI4 295 aa11.52□□□□□ -0.57
HCFC1-201ENST00000310441 TP53TG3Q9ULZ0 132 aa11.52□□□□□ -0.57
HCFC1-201ENST00000310441 Q8N976 141 aa11.52□□□□□ -0.57
HCFC1-201ENST00000310441 Q6ZQY7 126 aa11.52□□□□□ -0.57
HCFC1-201ENST00000310441 MRPS12O15235 138 aaKnown RBP11.51□□□□□ -0.57
HCFC1-201ENST00000310441 F8WDY8 70 aa11.51□□□□□ -0.57
HCFC1-201ENST00000310441 PLA2G2EQ9NZK7 142 aa11.51□□□□□ -0.57
HCFC1-201ENST00000310441 XAGE1AQ9HD64 81 aa11.51□□□□□ -0.57
HCFC1-201ENST00000310441 USP9XQ93008 2570 aaPredicted RBP11.51□□□□□ -0.57
HCFC1-201ENST00000310441 SPINK6Q6UWN8 80 aa11.51□□□□□ -0.57
HCFC1-201ENST00000310441 WFDC13Q8IUB5 93 aa11.51□□□□□ -0.57
HCFC1-201ENST00000310441 RPL28P46779 137 aaKnown RBP11.51□□□□□ -0.57
HCFC1-201ENST00000310441 IGLV2-8P01709 118 aa11.5□□□□□ -0.57
HCFC1-201ENST00000310441 IGF2RP11717 2491 aa11.5□□□□□ -0.57
HCFC1-201ENST00000310441 EIF4EBP1Q13541 118 aaPredicted RBP11.49□□□□□ -0.57
HCFC1-201ENST00000310441 TRBV7-6A0A0J9YX20 115 aa11.49□□□□□ -0.57
HCFC1-201ENST00000310441 SMIM11BQ8TCY0 68 aa11.49□□□□□ -0.57
HCFC1-201ENST00000310441 SERTAD4-AS1Q5TG53 156 aa11.48□□□□□ -0.57
HCFC1-201ENST00000310441 M0QXV9 152 aa11.47□□□□□ -0.57
HCFC1-201ENST00000310441 GDF5OSQ5U4N7 250 aa11.47□□□□□ -0.57
HCFC1-201ENST00000310441 DCANP1Q8TF63 244 aa11.47□□□□□ -0.57
HCFC1-201ENST00000310441 ANKRD11Q6UB99 2663 aaPredicted RBP11.47□□□□□ -0.57
HCFC1-201ENST00000310441 LINC00694P0DN24 101 aa11.47□□□□□ -0.57
HCFC1-201ENST00000310441 MBD6Q96DN6 1003 aa11.46□□□□□ -0.57
HCFC1-201ENST00000310441 FAM30AQ9NZY2 134 aa11.46□□□□□ -0.57
HCFC1-201ENST00000310441 TSHBP01222 138 aa11.46□□□□□ -0.57
HCFC1-201ENST00000310441 DEFB1P60022 68 aa11.46□□□□□ -0.58
HCFC1-201ENST00000310441 KPRPQ5T749 579 aaPredicted RBP11.46□□□□□ -0.58
HCFC1-201ENST00000310441 CNFNQ9BYD5 112 aa11.46□□□□□ -0.58
HCFC1-201ENST00000310441 RBX1P62877 108 aa11.46□□□□□ -0.58
HCFC1-201ENST00000310441 ESRGQ1W209 222 aa11.46□□□□□ -0.58
HCFC1-201ENST00000310441 PLAC8L1A1L4L8 177 aa11.45□□□□□ -0.58
HCFC1-201ENST00000310441 EBI3Q14213 229 aa11.45□□□□□ -0.58
HCFC1-201ENST00000310441 PRR4Q16378 134 aa11.44□□□□□ -0.58
HCFC1-201ENST00000310441 NTM-AS1Q6ZSK4 140 aa11.44□□□□□ -0.58
HCFC1-201ENST00000310441 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.44□□□□□ -0.58
HCFC1-201ENST00000310441 CHCHD7Q9BUK0 85 aa11.44□□□□□ -0.58
HCFC1-201ENST00000310441 FLG2Q5D862 2391 aaPredicted RBP11.43□□□□□ -0.58
HCFC1-201ENST00000310441 NCOR2Q9Y618 2525 aa11.43□□□□□ -0.58
HCFC1-201ENST00000310441 IGLV9-49A0A0B4J1Y8 123 aa11.43□□□□□ -0.58
HCFC1-201ENST00000310441 IGHV4-31P0DP07 118 aa11.43□□□□□ -0.58
HCFC1-201ENST00000310441 CCDC179H3BU77 68 aa11.43□□□□□ -0.58
HCFC1-201ENST00000310441 REG3GQ6UW15 175 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 KLLNB2CW77 178 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 Q8N814 137 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 HRCT1Q6UXD1 115 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 C2orf91Q6ZV80 131 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 MAPKAPK5-AS1Q8N8E1 139 aa11.42□□□□□ -0.58
HCFC1-201ENST00000310441 LMO4P61968 165 aa11.41□□□□□ -0.58
HCFC1-201ENST00000310441 PSMG3-AS1Q96PY0 264 aa11.41□□□□□ -0.58
HCFC1-201ENST00000310441 C22orf34Q6ZV56 151 aa11.41□□□□□ -0.58
HCFC1-201ENST00000310441 FRMD6-AS1P0C7T7 363 aa11.41□□□□□ -0.58
HCFC1-201ENST00000310441 LINC00526Q96FQ7 95 aa11.41□□□□□ -0.58
HCFC1-201ENST00000310441 LINC00959A0A1B0GUT2 108 aa11.4□□□□□ -0.58
HCFC1-201ENST00000310441 NUPR2A6NF83 97 aa11.4□□□□□ -0.58
HCFC1-201ENST00000310441 C1orf137Q5JT78 98 aa11.4□□□□□ -0.59
HCFC1-201ENST00000310441 IGHV4-30-4P0DP06 118 aa11.39□□□□□ -0.59
HCFC1-201ENST00000310441 YPEL4Q96NS1 127 aa11.39□□□□□ -0.59
HCFC1-201ENST00000310441 EGFEM1PQ0D2K5 195 aa11.39□□□□□ -0.59
HCFC1-201ENST00000310441 LIMD2Q9BT23 127 aa11.38□□□□□ -0.59
HCFC1-201ENST00000310441 NRGNQ92686 78 aa11.38□□□□□ -0.59
HCFC1-201ENST00000310441 ZNF843Q8N446 348 aa11.38□□□□□ -0.59
HCFC1-201ENST00000310441 IGLV2-11P01706 119 aa11.38□□□□□ -0.59
HCFC1-201ENST00000310441 hDV103S1A0JD37 113 aa11.37□□□□□ -0.59
HCFC1-201ENST00000310441 CLUHP3Q96NS8 147 aa11.37□□□□□ -0.59
HCFC1-201ENST00000310441 MUC22E2RYF6 1773 aaPredicted RBP11.37□□□□□ -0.59
HCFC1-201ENST00000310441 LOC100131303A0A0U1RQF7 123 aa11.37□□□□□ -0.59
HCFC1-201ENST00000310441 CRIP1P50238 77 aa11.37□□□□□ -0.59
HCFC1-201ENST00000310441 PPDPFQ9H3Y8 114 aa11.36□□□□□ -0.59
HCFC1-201ENST00000310441 CSDC2Q9Y534 153 aaKnown RBP11.36□□□□□ -0.59
HCFC1-201ENST00000310441 BBC3Q96PG8 261 aaPredicted RBP11.36□□□□□ -0.59
HCFC1-201ENST00000310441 RPL37AP8A6NKH3 93 aa11.36□□□□□ -0.59
HCFC1-201ENST00000310441 LINC00208Q96KT6 92 aa11.36□□□□□ -0.59
HCFC1-201ENST00000310441 RNASE3P12724 160 aaKnown RBP11.35□□□□□ -0.59
HCFC1-201ENST00000310441 CELA1Q9UNI1 258 aa11.35□□□□□ -0.59
HCFC1-201ENST00000310441 XGP55808 180 aa11.35□□□□□ -0.59
HCFC1-201ENST00000310441 PCSK5Q92824 1860 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 CDC42SE2Q9NRR3 84 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 SPTBN4Q9H254 2564 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 POLR2KP53803 58 aaKnown RBP11.34□□□□□ -0.59
HCFC1-201ENST00000310441 CXCL6P80162 114 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 PRORYQ9H606 182 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 MTORP42345 2549 aa11.34□□□□□ -0.59
HCFC1-201ENST00000310441 LINC01547P58512 204 aaPredicted RBP11.32□□□□□ -0.6
HCFC1-201ENST00000310441 USP9YO00507 2555 aaPredicted RBP11.32□□□□□ -0.6
HCFC1-201ENST00000310441 CYSRT1A8MQ03 144 aa11.32□□□□□ -0.6
HCFC1-201ENST00000310441 COL4A3Q01955 1670 aa11.32□□□□□ -0.6
HCFC1-201ENST00000310441 CIRBP-AS1Q8TBR5 109 aa11.32□□□□□ -0.6
HCFC1-201ENST00000310441 TRBV7-7A0A0K0K1E9 115 aa11.31□□□□□ -0.6
HCFC1-201ENST00000310441 H0Y9P7 68 aa11.31□□□□□ -0.6
HCFC1-201ENST00000310441 PRO0628Q9UI54 55 aa11.31□□□□□ -0.6
HCFC1-201ENST00000310441 NANOS2P60321 138 aaKnown RBP11.3□□□□□ -0.6
HCFC1-201ENST00000310441 Q8N3U1 123 aa11.29□□□□□ -0.6
HCFC1-201ENST00000310441 IGHV6-1A0A0B4J1U7 121 aa11.29□□□□□ -0.6
HCFC1-201ENST00000310441 TP53AIP1Q9HCN2 124 aa11.29□□□□□ -0.6
HCFC1-201ENST00000310441 LINC01561Q8N1V8 128 aa11.29□□□□□ -0.6
HCFC1-201ENST00000310441 Q8NA96 180 aa11.29□□□□□ -0.6
HCFC1-201ENST00000310441 HCG22E2RYF7 251 aa11.28□□□□□ -0.6
HCFC1-201ENST00000310441 Q6ZSV7 163 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms