RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 AJUBAQ96IF1 538 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 SPINK2P20155 84 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 XAGE1AQ9HD64 81 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 CDKN2A-AS1Q9UH64 79 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 IGHV3-16A0A0C4DH30 117 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 IGLV2-8P01709 118 aa3.62□□□□□ -1.83
CSMD3-201ENST00000297405 TRBV6-8A0A0A6YYG3 113 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 MYCNOSP40205 109 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 SMIM11BQ8TCY0 68 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 LCA10Q71F78 164 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 C11orf53Q8IXP5 236 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 LOC110117498A0A087WWA1 95 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 Q6ZQY7 126 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 CLPSP04118 112 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 IGFBP6P24592 240 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-201ENST00000297405 LINC01547P58512 204 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-201ENST00000297405 RNASE13Q5GAN3 156 aaKnown RBP3.61□□□□□ -1.83
CSMD3-201ENST00000297405 IGHV3-38A0A0C4DH36 116 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 DEFB121Q5J5C9 76 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 TP53TG3Q9ULZ0 132 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 IGKV1OR2-108A0A075B7D4 117 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 Q6ZQT7 251 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 IGSF10Q6WRI0 2623 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 A0A1B0GU69 56 aa3.61□□□□□ -1.83
CSMD3-201ENST00000297405 POLR2KP53803 58 aaKnown RBP3.61□□□□□ -1.83
CSMD3-201ENST00000297405 H0Y9P7 68 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 REG3AQ06141 175 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 C3orf84H3BNL1 204 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 MLANAQ16655 118 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 SBSPONQ8IVN8 264 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 DEFB123Q8N688 67 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 IGHV7-81A0A0B4J1V7 117 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 Q8N9W7 124 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 LINC01560Q8TB33 94 aa3.6□□□□□ -1.83
CSMD3-201ENST00000297405 IGIPA6NJ69 53 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 IGLV2-14P01704 120 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 GDF5OSQ5U4N7 250 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 DNAJC9-AS1A6NH13 148 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 LINC00322Q6ZN03 302 aaPredicted RBP3.59□□□□□ -1.83
CSMD3-201ENST00000297405 PLA2G2EQ9NZK7 142 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 COL4A6Q14031 1691 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 PATE2Q6UY27 113 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 RPP25Q9BUL9 199 aaKnown RBP3.59□□□□□ -1.83
CSMD3-201ENST00000297405 RSPO1Q2MKA7 263 aaPredicted RBP3.59□□□□□ -1.83
CSMD3-201ENST00000297405 C5orf56Q8N8D9 126 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 MAPKAPK5-AS1Q8N8E1 139 aa3.59□□□□□ -1.83
CSMD3-201ENST00000297405 C1orf137Q5JT78 98 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 SOSTDC1Q6X4U4 206 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 MSRB1Q9NZV6 116 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 Q6ZTC4 211 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 A0A1B0GUV1 79 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 UQCR11O14957 56 aa3.59□□□□□ -1.84
CSMD3-201ENST00000297405 KLLNB2CW77 178 aa3.58□□□□□ -1.84
CSMD3-201ENST00000297405 ITGBL1O95965 494 aaPredicted RBP3.58□□□□□ -1.84
CSMD3-201ENST00000297405 TRAV22A0A0B4J277 110 aa3.58□□□□□ -1.84
CSMD3-201ENST00000297405 EGFEM1PQ0D2K5 195 aa3.58□□□□□ -1.84
CSMD3-201ENST00000297405 SPANXA2-OT1Q8N9U9 137 aa3.58□□□□□ -1.84
CSMD3-201ENST00000297405 IGLV1-47P01700 117 aa3.58□□□□□ -1.84
CSMD3-201ENST00000297405 IGLV4-69A0A075B6H9 119 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 CHCHD10Q8WYQ3 142 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-201ENST00000297405 TTTY13Q9BZ97 58 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 LINC01565O15544 149 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 PRB2P02812 416 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-201ENST00000297405 C4orf26Q17RF5 130 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 SPRNQ5BIV9 151 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 COL4A1P02462 1669 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 E7EQL1 145 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 G3V318 75 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 IGLV2-11P01706 119 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 C9orf116Q5BN46 136 aaPredicted RBP3.57□□□□□ -1.84
CSMD3-201ENST00000297405 CLPSL2Q6UWE3 100 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 AMELXQ99217 191 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 C7orf33Q8WU49 177 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 SRCAPQ6ZRS2 3230 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 IGKV1D-37A0A075B6S9 117 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 TSHBP01222 138 aa3.57□□□□□ -1.84
CSMD3-201ENST00000297405 IGFL4Q6B9Z1 124 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 CHD9Q3L8U1 2897 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 ZFP36P26651 326 aaKnown RBP3.56□□□□□ -1.84
CSMD3-201ENST00000297405 VWCEQ96DN2 955 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 IGF2-ASQ6U949 168 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 C1orf64Q8NEQ6 169 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 KLK12Q9UKR0 248 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 BRI3O95415 125 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 IGLV10-54A0A075B6I4 117 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 COL4A4P53420 1690 aaPredicted RBP3.56□□□□□ -1.84
CSMD3-201ENST00000297405 LY6HO94772 140 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 SYCNQ0VAF6 134 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 LYPD2Q6UXB3 125 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 ZNF580Q9UK33 172 aa3.56□□□□□ -1.84
CSMD3-201ENST00000297405 ATP1A1-AS1Q5TC04 95 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 IGLV2-23P01705 113 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 LYPD5Q6UWN5 251 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 LINC00575Q6W349 94 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 Q8N2B8 174 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 MOBPQ13875 183 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 LUZP6Q538Z0 58 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 C22orf34Q6ZV56 151 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 PSMG3-AS1Q96PY0 264 aa3.55□□□□□ -1.84
CSMD3-201ENST00000297405 CRIP2P52943 208 aaPredicted RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 161.5 ms