RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 LENEPQ9Y5L5 61 aa9.88□□□□□ -0.83
GABPB1-201ENST00000220429 KRTAP10-9P60411 292 aa9.88□□□□□ -0.83
GABPB1-201ENST00000220429 FAM218AQ96MZ4 157 aa9.88□□□□□ -0.83
GABPB1-201ENST00000220429 IGKV3-7A0A075B6H7 116 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 TRBV27A0A0K0K1C4 114 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 ZFAND2AQ8N6M9 145 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 CREBBPQ92793 2442 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 TIMM17BO60830 172 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 Q9HAA7 133 aa9.87□□□□□ -0.83
GABPB1-201ENST00000220429 F6UB75 175 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 LINC00315P59091 139 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 SS18Q15532 418 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 PMAIP1Q13794 54 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 SUMO4Q6EEV6 95 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 AKAP9Q99996 3911 aa9.86□□□□□ -0.83
GABPB1-201ENST00000220429 TRBV7-6A0A0J9YX20 115 aa9.85□□□□□ -0.83
GABPB1-201ENST00000220429 KIF25-AS1Q9Y6Z4 181 aa9.85□□□□□ -0.83
GABPB1-201ENST00000220429 CCKP06307 115 aa9.85□□□□□ -0.83
GABPB1-201ENST00000220429 APCP25054 2843 aa9.85□□□□□ -0.83
GABPB1-201ENST00000220429 IGLV4-3A0A075B6K6 122 aa9.84□□□□□ -0.83
GABPB1-201ENST00000220429 A8MZ25 164 aa9.84□□□□□ -0.83
GABPB1-201ENST00000220429 K7EMT4 169 aa9.84□□□□□ -0.83
GABPB1-201ENST00000220429 FSHBP01225 129 aa9.84□□□□□ -0.83
GABPB1-201ENST00000220429 MED14OSP0DP75 135 aa9.84□□□□□ -0.83
GABPB1-201ENST00000220429 RBM3P98179 157 aaKnown RBP9.84□□□□□ -0.83
GABPB1-201ENST00000220429 C9orf129Q5T035 196 aaKnown RBP9.84□□□□□ -0.83
GABPB1-201ENST00000220429 IGHV4-31P0DP07 118 aa9.84□□□□□ -0.84
GABPB1-201ENST00000220429 TRAV21A0A0B4J279 112 aa9.83□□□□□ -0.84
GABPB1-201ENST00000220429 F5H697 171 aa9.83□□□□□ -0.84
GABPB1-201ENST00000220429 LINC00308Q8TCZ7 52 aa9.83□□□□□ -0.84
GABPB1-201ENST00000220429 KLKP1Q107X0 134 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 WFDC9Q8NEX5 89 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 SORL1Q92673 2214 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 TLN2Q9Y4G6 2542 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 APRG1Q8IVJ8 170 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 C20orf203Q8NBC4 194 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 RETNQ9HD89 108 aa9.82□□□□□ -0.84
GABPB1-201ENST00000220429 TMEM89A2RUT3 159 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 GNRH2O43555 120 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 RNASE3P12724 160 aaKnown RBP9.81□□□□□ -0.84
GABPB1-201ENST00000220429 RNASE4P34096 147 aaKnown RBP9.81□□□□□ -0.84
GABPB1-201ENST00000220429 Q6YL49 198 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 OBSCN-AS1Q96MR7 158 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 MUC4Q99102 2169 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 TRBV6-5A0A0K0K1A5 114 aa9.81□□□□□ -0.84
GABPB1-201ENST00000220429 HOXD3P31249 432 aaPredicted RBP9.8□□□□□ -0.84
GABPB1-201ENST00000220429 DEFB113Q30KQ7 82 aa9.8□□□□□ -0.84
GABPB1-201ENST00000220429 ZNF702PQ9H963 129 aa9.8□□□□□ -0.84
GABPB1-201ENST00000220429 MYO9AB2RTY4 2548 aa9.8□□□□□ -0.84
GABPB1-201ENST00000220429 ATP5EP2Q5VTU8 51 aa9.8□□□□□ -0.84
GABPB1-201ENST00000220429 TRAV7A0A075B6U4 112 aa9.79□□□□□ -0.84
GABPB1-201ENST00000220429 A0A087WWL8 130 aa9.79□□□□□ -0.84
GABPB1-201ENST00000220429 F8WEM9 126 aa9.79□□□□□ -0.84
GABPB1-201ENST00000220429 S100A7L2Q5SY68 101 aa9.79□□□□□ -0.84
GABPB1-201ENST00000220429 ENHOQ6UWT2 76 aa9.78□□□□□ -0.84
GABPB1-201ENST00000220429 KLLNB2CW77 178 aa9.77□□□□□ -0.84
GABPB1-201ENST00000220429 CD28P10747 220 aa9.77□□□□□ -0.84
GABPB1-201ENST00000220429 RMI2Q96E14 147 aa9.77□□□□□ -0.84
GABPB1-201ENST00000220429 SNURFQ9Y675 71 aa9.77□□□□□ -0.84
GABPB1-201ENST00000220429 ITPR3Q14573 2671 aa9.77□□□□□ -0.85
GABPB1-201ENST00000220429 SNRPD3P62318 126 aaKnown RBP9.76□□□□□ -0.85
GABPB1-201ENST00000220429 MPLKIPQ8TAP9 179 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 Q96MF0 132 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 NDUFA1O15239 70 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 HIST2H2BCQ6DN03 193 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 HIST2H2BDQ6DRA6 164 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 BCE1O60756 84 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 KRTAP1-3Q8IUG1 177 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 OVOL2Q9BRP0 275 aa9.76□□□□□ -0.85
GABPB1-201ENST00000220429 TENM4Q6N022 2769 aa9.75□□□□□ -0.85
GABPB1-201ENST00000220429 SONP18583 2426 aaKnown RBP9.75□□□□□ -0.85
GABPB1-201ENST00000220429 NCR3O14931 201 aa9.75□□□□□ -0.85
GABPB1-201ENST00000220429 ATP5EP56381 51 aaPredicted RBP9.75□□□□□ -0.85
GABPB1-201ENST00000220429 CD164Q04900 197 aa9.75□□□□□ -0.85
GABPB1-201ENST00000220429 SOSTDC1Q6X4U4 206 aa9.75□□□□□ -0.85
GABPB1-201ENST00000220429 UBE2E2Q96LR5 201 aa9.75□□□□□ -0.85
GABPB1-201ENST00000220429 K7EQG2 157 aa9.74□□□□□ -0.85
GABPB1-201ENST00000220429 PRR15Q8IV56 129 aa9.74□□□□□ -0.85
GABPB1-201ENST00000220429 ZNF625Q96I27 306 aaPredicted RBP9.74□□□□□ -0.85
GABPB1-201ENST00000220429 FAM74A4Q5TZK3 123 aa9.74□□□□□ -0.85
GABPB1-201ENST00000220429 C1orf158Q8N1D5 194 aa9.74□□□□□ -0.85
GABPB1-201ENST00000220429 FAM104AQ969W3 186 aa9.74□□□□□ -0.85
GABPB1-201ENST00000220429 TRBV10-3A0A0K0K1G6 114 aa9.73□□□□□ -0.85
GABPB1-201ENST00000220429 A0A087WYN8 130 aa9.73□□□□□ -0.85
GABPB1-201ENST00000220429 RNASE13Q5GAN3 156 aaKnown RBP9.73□□□□□ -0.85
GABPB1-201ENST00000220429 Q6ZRU5 148 aa9.73□□□□□ -0.85
GABPB1-201ENST00000220429 C18orf65Q6ZTR6 163 aa9.73□□□□□ -0.85
GABPB1-201ENST00000220429 CCDC168Q8NDH2 2452 aa9.73□□□□□ -0.85
GABPB1-201ENST00000220429 CUBNO60494 3623 aa9.72□□□□□ -0.85
GABPB1-201ENST00000220429 M0QY20 66 aa9.72□□□□□ -0.85
GABPB1-201ENST00000220429 NDUFC1O43677 76 aa9.72□□□□□ -0.85
GABPB1-201ENST00000220429 NF1P21359 2839 aa9.72□□□□□ -0.85
GABPB1-201ENST00000220429 IGKV3-20P01619 116 aa9.72□□□□□ -0.85
GABPB1-201ENST00000220429 ANK3Q12955 4377 aaKnown RBP9.72□□□□□ -0.85
GABPB1-201ENST00000220429 TRAV13-2A0A0B4J235 113 aa9.71□□□□□ -0.85
GABPB1-201ENST00000220429 DEFB136Q30KP8 78 aa9.71□□□□□ -0.85
GABPB1-201ENST00000220429 FAM229BQ4G0N7 80 aa9.71□□□□□ -0.85
GABPB1-201ENST00000220429 FLNAP21333 2647 aaKnown RBP9.71□□□□□ -0.85
GABPB1-201ENST00000220429 CHD6Q8TD26 2715 aa9.71□□□□□ -0.86
GABPB1-201ENST00000220429 PLAC8L1A1L4L8 177 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms