RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TRAV10A0A0B4J240 114 aa13.86□□□□□ -0.19
CLN3-250ENST00000636839 VCX2Q9H322 139 aa13.86□□□□□ -0.19
CLN3-250ENST00000636839 DGAT2L7PQ6IED9 249 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 LYPD5Q6UWN5 251 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 STPG4Q8N801 248 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 PRO1933Q9H354 126 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 IGLV4-60A0A075B6I1 120 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 H3BNG1 76 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 NHLRC4P0CG21 123 aaPredicted RBP13.85□□□□□ -0.19
CLN3-250ENST00000636839 AMELXQ99217 191 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 VAMP8Q9BV40 100 aa13.85□□□□□ -0.19
CLN3-250ENST00000636839 LBHQ53QV2 105 aaPredicted RBP13.84□□□□□ -0.19
CLN3-250ENST00000636839 AMMECR1LQ6DCA0 310 aa13.84□□□□□ -0.19
CLN3-250ENST00000636839 MRPL52Q86TS9 123 aaKnown RBP13.84□□□□□ -0.19
CLN3-250ENST00000636839 FBN3Q75N90 2809 aa13.84□□□□□ -0.19
CLN3-250ENST00000636839 IGLV4-69A0A075B6H9 119 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 TRAV9-2A0A087WT02 112 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 TMEM262E9PQX1 116 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 F8VRH5 84 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 TMEM97Q5BJF2 176 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 TIMM21Q9BVV7 248 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 IGKCP01834 107 aa13.83□□□□□ -0.2
CLN3-250ENST00000636839 DPM2O94777 84 aa13.82□□□□□ -0.2
CLN3-250ENST00000636839 MPV17L2Q567V2 206 aa13.82□□□□□ -0.2
CLN3-250ENST00000636839 CDC42SE2Q9NRR3 84 aa13.82□□□□□ -0.2
CLN3-250ENST00000636839 ESRGQ1W209 222 aa13.81□□□□□ -0.2
CLN3-250ENST00000636839 OR5A1Q8NGJ0 315 aa13.81□□□□□ -0.2
CLN3-250ENST00000636839 A0A0J9YXV3 536 aa13.81□□□□□ -0.2
CLN3-250ENST00000636839 SPATA45Q537H7 98 aa13.81□□□□□ -0.2
CLN3-250ENST00000636839 CSDC2Q9Y534 153 aaKnown RBP13.81□□□□□ -0.2
CLN3-250ENST00000636839 C11orf86A6NJI1 115 aa13.8□□□□□ -0.2
CLN3-250ENST00000636839 IGLL5B9A064 214 aa13.8□□□□□ -0.2
CLN3-250ENST00000636839 MRPS36P82909 103 aaKnown RBP13.8□□□□□ -0.2
CLN3-250ENST00000636839 SH2D6Q7Z4S9 175 aa13.8□□□□□ -0.2
CLN3-250ENST00000636839 H7C423 109 aa13.8□□□□□ -0.2
CLN3-250ENST00000636839 RBX1P62877 108 aa13.79□□□□□ -0.2
CLN3-250ENST00000636839 ANKRD39Q53RE8 183 aa13.79□□□□□ -0.2
CLN3-250ENST00000636839 LELP1Q5T871 98 aa13.79□□□□□ -0.2
CLN3-250ENST00000636839 PAPPA-AS1Q5QFB9 102 aa13.78□□□□□ -0.2
CLN3-250ENST00000636839 TMEM101Q96IK0 257 aa13.78□□□□□ -0.2
CLN3-250ENST00000636839 TP73-AS1Q9UF72 201 aa13.78□□□□□ -0.2
CLN3-250ENST00000636839 IGKV3OR2-268A0A0C4DH90 116 aa13.78□□□□□ -0.2
CLN3-250ENST00000636839 CSMD3Q7Z407 3707 aa13.77□□□□□ -0.2
CLN3-250ENST00000636839 TRAV13-1A0A0B4J241 112 aa13.77□□□□□ -0.21
CLN3-250ENST00000636839 NPSP0C0P6 89 aa13.77□□□□□ -0.21
CLN3-250ENST00000636839 PLNP26678 52 aa13.77□□□□□ -0.21
CLN3-250ENST00000636839 PKIAP61925 76 aa13.76□□□□□ -0.21
CLN3-250ENST00000636839 C14orf144Q96I85 54 aa13.76□□□□□ -0.21
CLN3-250ENST00000636839 ZNF25P17030 456 aaPredicted RBP13.75□□□□□ -0.21
CLN3-250ENST00000636839 UBE2D1P51668 147 aa13.75□□□□□ -0.21
CLN3-250ENST00000636839 WFDC10BQ8IUB3 73 aa13.75□□□□□ -0.21
CLN3-250ENST00000636839 CHAC1Q9BUX1 264 aa13.75□□□□□ -0.21
CLN3-250ENST00000636839 TSTD3H0UI37 97 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 CLPSL2Q6UWE3 100 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 IGKV2D-26A0A0A0MRZ7 120 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 IGLC3P0DOY3 106 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 COX6A2Q02221 97 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 C2orf88Q9BSF0 95 aa13.74□□□□□ -0.21
CLN3-250ENST00000636839 HSBP1L1C9JCN9 74 aa13.73□□□□□ -0.21
CLN3-250ENST00000636839 A0A1B0GUV1 79 aa13.73□□□□□ -0.21
CLN3-250ENST00000636839 TMEM170BQ5T4T1 132 aa13.73□□□□□ -0.21
CLN3-250ENST00000636839 NFE4Q86UQ8 179 aa13.73□□□□□ -0.21
CLN3-250ENST00000636839 TIRAPP58753 221 aa13.72□□□□□ -0.21
CLN3-250ENST00000636839 SMAGPQ0VAQ4 97 aa13.72□□□□□ -0.21
CLN3-250ENST00000636839 LINC00242Q5T6M2 205 aa13.72□□□□□ -0.21
CLN3-250ENST00000636839 TTTY13Q9BZ97 58 aa13.72□□□□□ -0.21
CLN3-250ENST00000636839 IGHV3-30P01768 117 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 IGHV3-33P01772 117 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 IGHV3-30-3P0DP02 117 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 IGHV3-30-5P0DP03 117 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 ZNF22P17026 224 aaPredicted RBP13.71□□□□□ -0.22
CLN3-250ENST00000636839 LINC00269Q8N2A0 174 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 C15orf53Q8NAA6 179 aa13.71□□□□□ -0.22
CLN3-250ENST00000636839 DDTP30046 118 aa13.7□□□□□ -0.22
CLN3-250ENST00000636839 LYSTQ99698 3801 aa13.7□□□□□ -0.22
CLN3-250ENST00000636839 TRAV8-6A0A0B4J262 113 aa13.69□□□□□ -0.22
CLN3-250ENST00000636839 ANGP03950 147 aaKnown RBP13.69□□□□□ -0.22
CLN3-250ENST00000636839 LINC00588Q9Y4M8 146 aa13.69□□□□□ -0.22
CLN3-250ENST00000636839 TGP01266 2768 aa13.69□□□□□ -0.22
CLN3-250ENST00000636839 NMUP48645 174 aa13.69□□□□□ -0.22
CLN3-250ENST00000636839 IGHV3-64A0A075B6Q5 118 aa13.68□□□□□ -0.22
CLN3-250ENST00000636839 TINCRA0A1B0GVN0 87 aa13.68□□□□□ -0.22
CLN3-250ENST00000636839 PCP2Q8IVA1 136 aa13.68□□□□□ -0.22
CLN3-250ENST00000636839 DNAH7Q8WXX0 4024 aa13.68□□□□□ -0.22
CLN3-250ENST00000636839 CDKN2A-AS1Q9UH64 79 aa13.68□□□□□ -0.22
CLN3-250ENST00000636839 A0A1B0GV90 55 aa13.67□□□□□ -0.22
CLN3-250ENST00000636839 GEMIN7Q9H840 131 aaKnown RBP13.67□□□□□ -0.22
CLN3-250ENST00000636839 LINC00959A0A1B0GUT2 108 aa13.66□□□□□ -0.22
CLN3-250ENST00000636839 KLK12Q9UKR0 248 aa13.66□□□□□ -0.22
CLN3-250ENST00000636839 DYNC2H1Q8NCM8 4307 aaKnown RBP13.65□□□□□ -0.22
CLN3-250ENST00000636839 TENM2Q9NT68 2774 aa13.65□□□□□ -0.22
CLN3-250ENST00000636839 STARD9Q9P2P6 4700 aa13.65□□□□□ -0.22
CLN3-250ENST00000636839 TRAV8-3A0A0A6YYJ7 113 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 TMEM223A0PJW6 202 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 APLNQ9ULZ1 77 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 IGLV10-54A0A075B6I4 117 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 SPINK8P0C7L1 97 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 REG3AQ06141 175 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 FAM19A3Q7Z5A8 133 aa13.64□□□□□ -0.23
CLN3-250ENST00000636839 MAPKAPK5-AS1Q8N8E1 139 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms