RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DNAH5Q8TE73 4624 aa13.63□□□□□ -0.23
CLN3-240ENST00000631023 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.62□□□□□ -0.23
CLN3-240ENST00000631023 KRTAP26-1Q6PEX3 210 aa13.62□□□□□ -0.23
CLN3-240ENST00000631023 LRP1BQ9NZR2 4599 aa13.62□□□□□ -0.23
CLN3-240ENST00000631023 APOC3P02656 99 aa13.62□□□□□ -0.23
CLN3-240ENST00000631023 RAB5AP20339 215 aa13.62□□□□□ -0.23
CLN3-240ENST00000631023 USP17L23D6RBM5 183 aa13.61□□□□□ -0.23
CLN3-240ENST00000631023 MAP1LC3AQ9H492 121 aa13.61□□□□□ -0.23
CLN3-240ENST00000631023 CSDC2Q9Y534 153 aaKnown RBP13.61□□□□□ -0.23
CLN3-240ENST00000631023 PRSS47A8MTI9 375 aa13.6□□□□□ -0.23
CLN3-240ENST00000631023 SVBPQ8N300 66 aa13.6□□□□□ -0.23
CLN3-240ENST00000631023 ZNF664Q8N3J9 261 aa13.6□□□□□ -0.23
CLN3-240ENST00000631023 CDC42SE2Q9NRR3 84 aa13.6□□□□□ -0.23
CLN3-240ENST00000631023 SNAPINO95295 136 aa13.59□□□□□ -0.23
CLN3-240ENST00000631023 COX19Q49B96 90 aa13.59□□□□□ -0.23
CLN3-240ENST00000631023 KRTAP10-1P60331 282 aa13.58□□□□□ -0.23
CLN3-240ENST00000631023 GNB1LQ9BYB4 327 aa13.58□□□□□ -0.23
CLN3-240ENST00000631023 UBE2D4Q9Y2X8 147 aa13.58□□□□□ -0.23
CLN3-240ENST00000631023 LOC389332A0A1B0GUA5 103 aa13.58□□□□□ -0.24
CLN3-240ENST00000631023 CHCHD10Q8WYQ3 142 aaPredicted RBP13.58□□□□□ -0.24
CLN3-240ENST00000631023 TIMM21Q9BVV7 248 aa13.58□□□□□ -0.24
CLN3-240ENST00000631023 GAGE12HA6NDE8 117 aa13.56□□□□□ -0.24
CLN3-240ENST00000631023 SS18Q15532 418 aa13.56□□□□□ -0.24
CLN3-240ENST00000631023 LINC00959A0A1B0GUT2 108 aa13.55□□□□□ -0.24
CLN3-240ENST00000631023 Q8N8P6 123 aa13.55□□□□□ -0.24
CLN3-240ENST00000631023 RPL39P62891 51 aaKnown RBP13.54□□□□□ -0.24
CLN3-240ENST00000631023 CFAP161Q6P656 301 aa13.54□□□□□ -0.24
CLN3-240ENST00000631023 MT-ND6P03923 174 aa13.54□□□□□ -0.24
CLN3-240ENST00000631023 PRSS1P07477 247 aa13.54□□□□□ -0.24
CLN3-240ENST00000631023 KIAA1644Q3SXP7 199 aa13.54□□□□□ -0.24
CLN3-240ENST00000631023 NXT2Q9NPJ8 142 aaKnown RBP13.54□□□□□ -0.24
CLN3-240ENST00000631023 SPANXA1Q9NS26 97 aa13.54□□□□□ -0.24
CLN3-240ENST00000631023 K7EMI3 77 aa13.53□□□□□ -0.24
CLN3-240ENST00000631023 CCL25O15444 150 aa13.53□□□□□ -0.24
CLN3-240ENST00000631023 XCL1P47992 114 aa13.52□□□□□ -0.25
CLN3-240ENST00000631023 HERC2O95714 4834 aa13.52□□□□□ -0.25
CLN3-240ENST00000631023 C1orf196B1AJZ1 125 aa13.51□□□□□ -0.25
CLN3-240ENST00000631023 RYR1P21817 5038 aa13.51□□□□□ -0.25
CLN3-240ENST00000631023 hDV102S1A0JD36 115 aa13.5□□□□□ -0.25
CLN3-240ENST00000631023 ORMDL2Q53FV1 153 aa13.5□□□□□ -0.25
CLN3-240ENST00000631023 AP5S1Q9NUS5 200 aa13.5□□□□□ -0.25
CLN3-240ENST00000631023 IFI27P40305 119 aaPredicted RBP13.49□□□□□ -0.25
CLN3-240ENST00000631023 RNASE13Q5GAN3 156 aaKnown RBP13.49□□□□□ -0.25
CLN3-240ENST00000631023 Q6ZUT4 128 aa13.49□□□□□ -0.25
CLN3-240ENST00000631023 MRPL18Q9H0U6 180 aaKnown RBP13.49□□□□□ -0.25
CLN3-240ENST00000631023 MRPS36P82909 103 aaKnown RBP13.49□□□□□ -0.25
CLN3-240ENST00000631023 FABP9Q0Z7S8 132 aa13.49□□□□□ -0.25
CLN3-240ENST00000631023 FOXI1Q12951 378 aa13.49□□□□□ -0.25
CLN3-240ENST00000631023 CD164L2Q6UWJ8 174 aa13.49□□□□□ -0.25
CLN3-240ENST00000631023 HSPG2P98160 4391 aa13.48□□□□□ -0.25
CLN3-240ENST00000631023 APOBP04114 4563 aaKnown RBP13.48□□□□□ -0.25
CLN3-240ENST00000631023 TGIF2-C20orf24A0A0A6YYL0 155 aa13.48□□□□□ -0.25
CLN3-240ENST00000631023 G0S2P27469 103 aa13.48□□□□□ -0.25
CLN3-240ENST00000631023 PYGO1Q9Y3Y4 419 aa13.48□□□□□ -0.25
CLN3-240ENST00000631023 TRAV13-1A0A0B4J241 112 aa13.47□□□□□ -0.25
CLN3-240ENST00000631023 XGP55808 180 aa13.47□□□□□ -0.25
CLN3-240ENST00000631023 LINC01620Q4KN68 170 aa13.47□□□□□ -0.25
CLN3-240ENST00000631023 CYSLTR1Q9Y271 337 aa13.47□□□□□ -0.25
CLN3-240ENST00000631023 PRSS3P2Q8NHM4 247 aa13.46□□□□□ -0.25
CLN3-240ENST00000631023 ALKBH7Q9BT30 221 aaPredicted RBP13.46□□□□□ -0.25
CLN3-240ENST00000631023 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.45□□□□□ -0.26
CLN3-240ENST00000631023 C2orf66Q6UXQ4 117 aa13.45□□□□□ -0.26
CLN3-240ENST00000631023 SLC7A5P1Q8MH63 180 aa13.45□□□□□ -0.26
CLN3-240ENST00000631023 C15orf56Q8N910 161 aa13.45□□□□□ -0.26
CLN3-240ENST00000631023 CNBPP62633 177 aaKnown RBP13.45□□□□□ -0.26
CLN3-240ENST00000631023 C9orf163Q8N9P6 203 aa13.45□□□□□ -0.26
CLN3-240ENST00000631023 OPRPNQ99935 248 aaPredicted RBP13.45□□□□□ -0.26
CLN3-240ENST00000631023 TRAPPC1Q9Y5R8 145 aa13.45□□□□□ -0.26
CLN3-240ENST00000631023 FAM104AQ969W3 186 aa13.44□□□□□ -0.26
CLN3-240ENST00000631023 FAM30AQ9NZY2 134 aa13.44□□□□□ -0.26
CLN3-240ENST00000631023 IGHV1-58A0A0C4DH39 117 aa13.43□□□□□ -0.26
CLN3-240ENST00000631023 TMEM141Q96I45 108 aa13.43□□□□□ -0.26
CLN3-240ENST00000631023 MALP21145 153 aa13.42□□□□□ -0.26
CLN3-240ENST00000631023 Q6ZSA8 131 aa13.42□□□□□ -0.26
CLN3-240ENST00000631023 GVQW2A0A096LPI5 108 aaPredicted RBP13.41□□□□□ -0.26
CLN3-240ENST00000631023 COX7A2LO14548 114 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 HIGD2BQ4VC39 106 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 Q8N1X5 172 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 IGLV4-3A0A075B6K6 122 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 IFITM10A6NMD0 228 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 Q6ZN92 141 aa13.41□□□□□ -0.26
CLN3-240ENST00000631023 NPSP0C0P6 89 aa13.4□□□□□ -0.26
CLN3-240ENST00000631023 TEX43Q6ZNM6 134 aa13.39□□□□□ -0.27
CLN3-240ENST00000631023 SMCO4Q9NRQ5 59 aa13.39□□□□□ -0.27
CLN3-240ENST00000631023 SLPIP03973 132 aa13.38□□□□□ -0.27
CLN3-240ENST00000631023 FA2HQ7L5A8 372 aa13.38□□□□□ -0.27
CLN3-240ENST00000631023 C2orf88Q9BSF0 95 aa13.38□□□□□ -0.27
CLN3-240ENST00000631023 VCX2Q9H322 139 aa13.38□□□□□ -0.27
CLN3-240ENST00000631023 LINC01549A6NIU2 74 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 ZNF561-AS1K7EIQ3 104 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 HAMPP81172 84 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 PAPPA-AS1Q5QFB9 102 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 TOMM6Q96B49 74 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 IGHV3-64A0A075B6Q5 118 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 LINC01546A6NGU7 62 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 IGIPA6NJ69 53 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 APOMO95445 188 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 C5orf38Q86SI9 138 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 YPEL4Q96NS1 127 aa13.37□□□□□ -0.27
CLN3-240ENST00000631023 SDIM1Q6ZPB5 146 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms