RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 VSIG2Q96IQ7 327 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 ESM1Q9NQ30 184 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 TRBV20-1A0A075B6N2 111 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 LINC00694P0DN24 101 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 ANKRD29Q8N6D5 301 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 NOP10Q9NPE3 64 aaKnown RBP9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 PLA2G2AP14555 144 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 COX6A2Q02221 97 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 SPANXA1Q9NS26 97 aa9.32□□□□□ -0.92
CCDC88A-214ENST00000621814 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-214ENST00000621814 CARD19Q96LW7 228 aa9.31□□□□□ -0.92
CCDC88A-214ENST00000621814 TINCRA0A1B0GVN0 87 aa9.31□□□□□ -0.92
CCDC88A-214ENST00000621814 SLC25A20O43772 301 aa9.31□□□□□ -0.92
CCDC88A-214ENST00000621814 KRTAP1-3Q8IUG1 177 aa9.31□□□□□ -0.92
CCDC88A-214ENST00000621814 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 IGKV3OR2-268A0A0C4DH90 116 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 SETXQ7Z333 2677 aaKnown RBP9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 RS1O15537 224 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 TEN1Q86WV5 123 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 LITAFQ99732 161 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 SPATA25Q9BR10 227 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 A8MTW9 85 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 FHL3Q13643 280 aa9.3□□□□□ -0.92
CCDC88A-214ENST00000621814 TRIAP1O43715 76 aa9.29□□□□□ -0.92
CCDC88A-214ENST00000621814 A0A0B4J2C4 111 aa9.29□□□□□ -0.92
CCDC88A-214ENST00000621814 TRGV2A0A075B6R0 118 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE7O76087 117 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE12FP0CL80 117 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE12GP0CL81 117 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE12IP0CL82 117 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 PPDPFLQ8WWR9 84 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 TMEM101Q96IK0 257 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 EDA2RQ9HAV5 297 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 YAE1D1Q9NRH1 226 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 BEAN1Q3B7T3 259 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 RPL36AP83881 106 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 LRRC75A-AS1Q8N1F1 130 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 RPL36ALQ969Q0 106 aaKnown RBP9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 DNAJC30Q96LL9 226 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 Q9H8V8 135 aa9.28□□□□□ -0.92
CCDC88A-214ENST00000621814 LOC100131303A0A0U1RQF7 123 aa9.27□□□□□ -0.93
CCDC88A-214ENST00000621814 MT-ATP8P03928 68 aa9.27□□□□□ -0.93
CCDC88A-214ENST00000621814 TENM4Q6N022 2769 aa9.27□□□□□ -0.93
CCDC88A-214ENST00000621814 CLEC2BQ92478 149 aa9.27□□□□□ -0.93
CCDC88A-214ENST00000621814 CDIP1Q9H305 208 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 K7EQD1 137 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 ATXN8Q156A1 80 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 MIAQ16674 131 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 NTM-AS1Q6ZSK4 140 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 ATP6V0E2Q8NHE4 81 aa9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 NTN5Q8WTR8 489 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 FN1P02751 2386 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-214ENST00000621814 CRYBA4P53673 196 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 LINC00242Q5T6M2 205 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 ZFAND6Q6FIF0 208 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 ITPR2Q14571 2701 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 UBE2L6O14933 153 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 XGP55808 180 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 PIK3CD-AS1Q5SR53 167 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 LINC01006Q8NI28 216 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 ICOSQ9Y6W8 199 aa9.25□□□□□ -0.93
CCDC88A-214ENST00000621814 LINC01620Q4KN68 170 aa9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 MEIG1Q5JSS6 88 aa9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 NBEAL2Q6ZNJ1 2754 aa9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 TEX49A0A1B0GTD5 131 aa9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 CIDEAO60543 219 aa9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 RPL13AP40429 203 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-214ENST00000621814 CIRBPQ14011 172 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-214ENST00000621814 PRIMA1Q86XR5 153 aa9.23□□□□□ -0.93
CCDC88A-214ENST00000621814 NOTCH2Q04721 2471 aa9.23□□□□□ -0.93
CCDC88A-214ENST00000621814 TRGV4A0A0C4DH28 118 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 COX6CP09669 75 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 SPANXDQ9BXN6 97 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 SPANXCQ9NY87 97 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 TOMM7Q9P0U1 55 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 TRAV25A0A0B4J276 109 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 HERVK_113P63121 156 aa9.22□□□□□ -0.93
CCDC88A-214ENST00000621814 GAGE6Q13070 117 aa9.21□□□□□ -0.93
CCDC88A-214ENST00000621814 TMEM86BQ8N661 226 aa9.21□□□□□ -0.93
CCDC88A-214ENST00000621814 GIG44P09565 113 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-214ENST00000621814 TIRAPP58753 221 aa9.21□□□□□ -0.94
CCDC88A-214ENST00000621814 C2orf82Q6UX34 121 aa9.21□□□□□ -0.94
CCDC88A-214ENST00000621814 SBSPONQ8IVN8 264 aa9.21□□□□□ -0.94
CCDC88A-214ENST00000621814 TRBV30A0A0K0K1B3 111 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 DEFB130BP0DP73 79 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 DEFB130AP0DP74 79 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 TRAV4A0A0B4J268 109 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 NDUFA1O15239 70 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 DAZ2Q13117 558 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 DAZ4Q86SG3 579 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 DAZ3Q9NR90 486 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 SMIM1B2RUZ4 78 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 CKS1BP61024 79 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 SMR3AQ99954 134 aa9.2□□□□□ -0.94
CCDC88A-214ENST00000621814 LINC00308Q8TCZ7 52 aa9.19□□□□□ -0.94
CCDC88A-214ENST00000621814 CDC42SE2Q9NRR3 84 aa9.19□□□□□ -0.94
CCDC88A-214ENST00000621814 TMEM243Q9BU79 118 aa9.19□□□□□ -0.94
CCDC88A-214ENST00000621814 SCGB1A1P11684 91 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 IL17DQ8TAD2 202 aa9.18□□□□□ -0.94
CCDC88A-214ENST00000621814 GCN1Q92616 2671 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms