RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 VCX2Q9H322 139 aa10.61□□□□□ -0.71
UPF1-206ENST00000598471 MRPS16Q9Y3D3 137 aaKnown RBP10.61□□□□□ -0.71
UPF1-206ENST00000598471 A0A1B0GUV1 79 aa10.6□□□□□ -0.71
UPF1-206ENST00000598471 PMVKQ15126 192 aa10.6□□□□□ -0.71
UPF1-206ENST00000598471 TEX43Q6ZNM6 134 aa10.6□□□□□ -0.71
UPF1-206ENST00000598471 Q6ZUT4 128 aa10.6□□□□□ -0.71
UPF1-206ENST00000598471 C2orf88Q9BSF0 95 aa10.6□□□□□ -0.71
UPF1-206ENST00000598471 TRAV12-1A0A0B4J245 112 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 RBX1P62877 108 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 MPV17L2Q567V2 206 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 SPATA12Q7Z6I5 190 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 UBE2DNLQ8IWF7 75 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 ZNF664Q8N3J9 261 aa10.59□□□□□ -0.71
UPF1-206ENST00000598471 OPRPNQ99935 248 aaPredicted RBP10.59□□□□□ -0.71
UPF1-206ENST00000598471 WFDC10BQ8IUB3 73 aa10.58□□□□□ -0.72
UPF1-206ENST00000598471 CDC42SE2Q9NRR3 84 aa10.58□□□□□ -0.72
UPF1-206ENST00000598471 LINC00588Q9Y4M8 146 aa10.58□□□□□ -0.72
UPF1-206ENST00000598471 SCGB1D1O95968 90 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 LGALS9CQ6DKI2 356 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 Q8N976 141 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 AMELXQ99217 191 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 UPK3BQ9BT76 320 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 CST9LQ9H4G1 147 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 DNAH7Q8WXX0 4024 aa10.57□□□□□ -0.72
UPF1-206ENST00000598471 IGLV4-60A0A075B6I1 120 aa10.56□□□□□ -0.72
UPF1-206ENST00000598471 PRSS29PA6NIE9 313 aa10.56□□□□□ -0.72
UPF1-206ENST00000598471 RNASE13Q5GAN3 156 aaKnown RBP10.56□□□□□ -0.72
UPF1-206ENST00000598471 LINC01545Q5VT33 79 aa10.56□□□□□ -0.72
UPF1-206ENST00000598471 CHTOPQ9Y3Y2 248 aaKnown RBP10.56□□□□□ -0.72
UPF1-206ENST00000598471 SIVA1O15304 175 aa10.55□□□□□ -0.72
UPF1-206ENST00000598471 ANGP03950 147 aaKnown RBP10.55□□□□□ -0.72
UPF1-206ENST00000598471 ODF1Q14990 250 aa10.55□□□□□ -0.72
UPF1-206ENST00000598471 JOSD1Q15040 202 aaPredicted RBP10.55□□□□□ -0.72
UPF1-206ENST00000598471 LINC01556Q5JQF7 62 aa10.55□□□□□ -0.72
UPF1-206ENST00000598471 F8VRH5 84 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 C3orf84H3BNL1 204 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 IGHV3-30P01768 117 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 IGHV3-33P01772 117 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 IGHV3-30-3P0DP02 117 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 IGHV3-30-5P0DP03 117 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 ZC2HC1BQ5TFG8 222 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 FAM104AQ969W3 186 aa10.54□□□□□ -0.72
UPF1-206ENST00000598471 DYNC2H1Q8NCM8 4307 aaKnown RBP10.53□□□□□ -0.72
UPF1-206ENST00000598471 DPM2O94777 84 aa10.53□□□□□ -0.72
UPF1-206ENST00000598471 DNAH10OSP0CZ25 163 aa10.53□□□□□ -0.72
UPF1-206ENST00000598471 PLNP26678 52 aa10.53□□□□□ -0.72
UPF1-206ENST00000598471 MRPL35Q9NZE8 188 aaKnown RBP10.53□□□□□ -0.72
UPF1-206ENST00000598471 CRPP02741 224 aa10.52□□□□□ -0.73
UPF1-206ENST00000598471 SEC11AP67812 179 aa10.52□□□□□ -0.73
UPF1-206ENST00000598471 CASC10Q5T4H9 136 aa10.52□□□□□ -0.73
UPF1-206ENST00000598471 TRAV13-1A0A0B4J241 112 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 IGKV3OR2-268A0A0C4DH90 116 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 CCL25O15444 150 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 IGKCP01834 107 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 SMIM6P0DI80 62 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 UBE2D1P51668 147 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 PYY3Q5JQD4 70 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 LINC00269Q8N2A0 174 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 Q8N3U1 123 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 PMCHL2Q9BQD1 86 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 KLK12Q9UKR0 248 aa10.51□□□□□ -0.73
UPF1-206ENST00000598471 TRAV9-2A0A087WT02 112 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 REG3AQ06141 175 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 SS18Q15532 418 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 C10orf126Q8N4M7 172 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 Q9H8V8 135 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 STARD9Q9P2P6 4700 aa10.5□□□□□ -0.73
UPF1-206ENST00000598471 TINCRA0A1B0GVN0 87 aa10.49□□□□□ -0.73
UPF1-206ENST00000598471 K7EP13 123 aa10.49□□□□□ -0.73
UPF1-206ENST00000598471 IGLC3P0DOY3 106 aa10.49□□□□□ -0.73
UPF1-206ENST00000598471 CLPSL2Q6UWE3 100 aa10.49□□□□□ -0.73
UPF1-206ENST00000598471 CHAC1Q9BUX1 264 aa10.49□□□□□ -0.73
UPF1-206ENST00000598471 GEMIN7Q9H840 131 aaKnown RBP10.49□□□□□ -0.73
UPF1-206ENST00000598471 IGLV4-69A0A075B6H9 119 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 A0A0J9YXV3 536 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 LINC00959A0A1B0GUT2 108 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 HERVK_113P63121 156 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 FAM19A3Q7Z5A8 133 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 NFE4Q86UQ8 179 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 PRR34Q9NV39 138 aa10.48□□□□□ -0.73
UPF1-206ENST00000598471 HSBP1L1C9JCN9 74 aa10.47□□□□□ -0.73
UPF1-206ENST00000598471 UBE2WQ96B02 151 aa10.47□□□□□ -0.73
UPF1-206ENST00000598471 TRAV8-4A0A0B4J246 113 aa10.46□□□□□ -0.73
UPF1-206ENST00000598471 C11orf86A6NJI1 115 aa10.46□□□□□ -0.73
UPF1-206ENST00000598471 MIAQ16674 131 aa10.46□□□□□ -0.73
UPF1-206ENST00000598471 LINC00242Q5T6M2 205 aa10.46□□□□□ -0.73
UPF1-206ENST00000598471 ATOH7Q8N100 152 aa10.46□□□□□ -0.73
UPF1-206ENST00000598471 S100A12P80511 92 aa10.45□□□□□ -0.74
UPF1-206ENST00000598471 TTC32Q5I0X7 151 aa10.45□□□□□ -0.74
UPF1-206ENST00000598471 TMEM170BQ5T4T1 132 aa10.45□□□□□ -0.74
UPF1-206ENST00000598471 LINC00469Q8N7U9 141 aa10.45□□□□□ -0.74
UPF1-206ENST00000598471 VAMP8Q9BV40 100 aa10.45□□□□□ -0.74
UPF1-206ENST00000598471 IBA57-AS1B1ANH7 110 aa10.44□□□□□ -0.74
UPF1-206ENST00000598471 H3BRM9 83 aa10.44□□□□□ -0.74
UPF1-206ENST00000598471 HERVK_113P61574 105 aa10.44□□□□□ -0.74
UPF1-206ENST00000598471 ENHOQ6UWT2 76 aa10.44□□□□□ -0.74
UPF1-206ENST00000598471 TRAV8-3A0A0A6YYJ7 113 aa10.43□□□□□ -0.74
UPF1-206ENST00000598471 ZNF22P17026 224 aaPredicted RBP10.43□□□□□ -0.74
UPF1-206ENST00000598471 XCL1P47992 114 aa10.43□□□□□ -0.74
UPF1-206ENST00000598471 CHCHD10Q8WYQ3 142 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms