RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 DGAT2L7PQ6IED9 249 aa17.03■□□□□ 0.32
TRIM28-204ENST00000594806 C14orf177Q52M58 125 aa17.02■□□□□ 0.32
TRIM28-204ENST00000594806 K7EMI3 77 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 KRTAP26-1Q6PEX3 210 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 SLC7A5P1Q8MH63 180 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 Q8N8P6 123 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 CDC42SE2Q9NRR3 84 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 UBE2D4Q9Y2X8 147 aa17.01■□□□□ 0.31
TRIM28-204ENST00000594806 ZNF664Q8N3J9 261 aa17■□□□□ 0.31
TRIM28-204ENST00000594806 NXT2Q9NPJ8 142 aaKnown RBP17■□□□□ 0.31
TRIM28-204ENST00000594806 IGLV10-54A0A075B6I4 117 aa16.99■□□□□ 0.31
TRIM28-204ENST00000594806 LOC389332A0A1B0GUA5 103 aa16.99■□□□□ 0.31
TRIM28-204ENST00000594806 WFDC2Q14508 124 aa16.99■□□□□ 0.31
TRIM28-204ENST00000594806 KIAA1644Q3SXP7 199 aa16.98■□□□□ 0.31
TRIM28-204ENST00000594806 LECT2O14960 151 aa16.97■□□□□ 0.31
TRIM28-204ENST00000594806 SPANXA1Q9NS26 97 aa16.97■□□□□ 0.31
TRIM28-204ENST00000594806 IGLV5-52A0A0A0MRZ9 124 aa16.96■□□□□ 0.31
TRIM28-204ENST00000594806 TGIF2-C20orf24A0A0A6YYL0 155 aa16.96■□□□□ 0.31
TRIM28-204ENST00000594806 IGKV3OR2-268A0A0C4DH90 116 aa16.96■□□□□ 0.31
TRIM28-204ENST00000594806 MRPL18Q9H0U6 180 aaKnown RBP16.96■□□□□ 0.31
TRIM28-204ENST00000594806 DYNC1H1Q14204 4646 aaKnown RBP16.95■□□□□ 0.3
TRIM28-204ENST00000594806 CCL25O15444 150 aa16.95■□□□□ 0.3
TRIM28-204ENST00000594806 FABP9Q0Z7S8 132 aa16.95■□□□□ 0.3
TRIM28-204ENST00000594806 ORMDL2Q53FV1 153 aa16.95■□□□□ 0.3
TRIM28-204ENST00000594806 LINC00959A0A1B0GUT2 108 aa16.93■□□□□ 0.3
TRIM28-204ENST00000594806 USP17L23D6RBM5 183 aa16.93■□□□□ 0.3
TRIM28-204ENST00000594806 G0S2P27469 103 aa16.93■□□□□ 0.3
TRIM28-204ENST00000594806 RPL39P62891 51 aaKnown RBP16.93■□□□□ 0.3
TRIM28-204ENST00000594806 SS18Q15532 418 aa16.93■□□□□ 0.3
TRIM28-204ENST00000594806 CHCHD10Q8WYQ3 142 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-204ENST00000594806 ALKBH7Q9BT30 221 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-204ENST00000594806 GCSHP23434 173 aa16.92■□□□□ 0.3
TRIM28-204ENST00000594806 MRPS36P82909 103 aaKnown RBP16.92■□□□□ 0.3
TRIM28-204ENST00000594806 TRAPPC1Q9Y5R8 145 aa16.92■□□□□ 0.3
TRIM28-204ENST00000594806 SMCO4Q9NRQ5 59 aa16.91■□□□□ 0.3
TRIM28-204ENST00000594806 PYGO1Q9Y3Y4 419 aa16.91■□□□□ 0.3
TRIM28-204ENST00000594806 GAGE12HA6NDE8 117 aa16.9■□□□□ 0.3
TRIM28-204ENST00000594806 FUSP35637 526 aaKnown RBP eCLIP16.9■□□□□ 0.33e-7■■□□□ 14.5
TRIM28-204ENST00000594806 IFI27P40305 119 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-204ENST00000594806 CDK2AP2O75956 126 aa16.89■□□□□ 0.29
TRIM28-204ENST00000594806 CFAP161Q6P656 301 aa16.89■□□□□ 0.29
TRIM28-204ENST00000594806 PRSS3P2Q8NHM4 247 aa16.89■□□□□ 0.29
TRIM28-204ENST00000594806 YPEL4Q96NS1 127 aa16.89■□□□□ 0.29
TRIM28-204ENST00000594806 CYSLTR1Q9Y271 337 aa16.89■□□□□ 0.29
TRIM28-204ENST00000594806 IGLV2-33A0A075B6J2 118 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-204ENST00000594806 C1orf196B1AJZ1 125 aa16.88■□□□□ 0.29
TRIM28-204ENST00000594806 Q6ZUT4 128 aa16.88■□□□□ 0.29
TRIM28-204ENST00000594806 NPSP0C0P6 89 aa16.86■□□□□ 0.29
TRIM28-204ENST00000594806 CD164L2Q6UWJ8 174 aa16.86■□□□□ 0.29
TRIM28-204ENST00000594806 C2orf66Q6UXQ4 117 aa16.86■□□□□ 0.29
TRIM28-204ENST00000594806 LINC01546A6NGU7 62 aa16.85■□□□□ 0.29
TRIM28-204ENST00000594806 XCL1P47992 114 aa16.85■□□□□ 0.29
TRIM28-204ENST00000594806 DNAH5Q8TE73 4624 aa16.84■□□□□ 0.29
TRIM28-204ENST00000594806 LINC01549A6NIU2 74 aa16.84■□□□□ 0.29
TRIM28-204ENST00000594806 PRSS1P07477 247 aa16.84■□□□□ 0.29
TRIM28-204ENST00000594806 FOXI1Q12951 378 aa16.84■□□□□ 0.29
TRIM28-204ENST00000594806 KRTAP10-1P60331 282 aa16.83■□□□□ 0.28
TRIM28-204ENST00000594806 RNASE13Q5GAN3 156 aaKnown RBP16.83■□□□□ 0.28
TRIM28-204ENST00000594806 FAM104AQ969W3 186 aa16.83■□□□□ 0.28
TRIM28-204ENST00000594806 LRP1BQ9NZR2 4599 aa16.82■□□□□ 0.28
TRIM28-204ENST00000594806 TRAV13-1A0A0B4J241 112 aa16.82■□□□□ 0.28
TRIM28-204ENST00000594806 CBLN2Q8IUK8 224 aa16.82■□□□□ 0.28
TRIM28-204ENST00000594806 TMEM141Q96I45 108 aa16.81■□□□□ 0.28
TRIM28-204ENST00000594806 IGLV4-3A0A075B6K6 122 aa16.8■□□□□ 0.28
TRIM28-204ENST00000594806 hDV102S1A0JD36 115 aa16.8■□□□□ 0.28
TRIM28-204ENST00000594806 FA2HQ7L5A8 372 aa16.8■□□□□ 0.28
TRIM28-204ENST00000594806 OPRPNQ99935 248 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-204ENST00000594806 AP5S1Q9NUS5 200 aa16.8■□□□□ 0.28
TRIM28-204ENST00000594806 Q6ZN92 141 aa16.79■□□□□ 0.28
TRIM28-204ENST00000594806 TOMM6Q96B49 74 aa16.79■□□□□ 0.28
TRIM28-204ENST00000594806 IFITM10A6NMD0 228 aa16.78■□□□□ 0.28
TRIM28-204ENST00000594806 PAPPA-AS1Q5QFB9 102 aa16.78■□□□□ 0.28
TRIM28-204ENST00000594806 C15orf56Q8N910 161 aa16.78■□□□□ 0.28
TRIM28-204ENST00000594806 IGHV1-58A0A0C4DH39 117 aa16.77■□□□□ 0.28
TRIM28-204ENST00000594806 IGIPA6NJ69 53 aa16.77■□□□□ 0.28
TRIM28-204ENST00000594806 CNBPP62633 177 aaKnown RBP16.77■□□□□ 0.28
TRIM28-204ENST00000594806 TEX43Q6ZNM6 134 aa16.77■□□□□ 0.28
TRIM28-204ENST00000594806 C18orf32Q8TCD1 76 aa16.77■□□□□ 0.28
TRIM28-204ENST00000594806 TIMM17AQ99595 171 aa16.77■□□□□ 0.28
TRIM28-204ENST00000594806 GVQW2A0A096LPI5 108 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-204ENST00000594806 COX7A2LO14548 114 aa16.75■□□□□ 0.27
TRIM28-204ENST00000594806 RAB5BP61020 215 aa16.75■□□□□ 0.27
TRIM28-204ENST00000594806 C2orf88Q9BSF0 95 aa16.75■□□□□ 0.27
TRIM28-204ENST00000594806 VCX2Q9H322 139 aa16.75■□□□□ 0.27
TRIM28-204ENST00000594806 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-204ENST00000594806 ERASQ7Z444 233 aa16.74■□□□□ 0.27
TRIM28-204ENST00000594806 C9orf163Q8N9P6 203 aa16.74■□□□□ 0.27
TRIM28-204ENST00000594806 AMELXQ99217 191 aa16.74■□□□□ 0.27
TRIM28-204ENST00000594806 LINC00614P0C842 121 aa16.72■□□□□ 0.27
TRIM28-204ENST00000594806 MALP21145 153 aa16.72■□□□□ 0.27
TRIM28-204ENST00000594806 KIAA1109Q2LD37 5005 aa16.72■□□□□ 0.27
TRIM28-204ENST00000594806 APOMO95445 188 aa16.71■□□□□ 0.27
TRIM28-204ENST00000594806 SCGB3A1Q96QR1 104 aa16.71■□□□□ 0.27
TRIM28-204ENST00000594806 IGHV3OR16-9A0A0B4J2B5 98 aa16.7■□□□□ 0.26
TRIM28-204ENST00000594806 HIGD2BQ4VC39 106 aa16.69■□□□□ 0.26
TRIM28-204ENST00000594806 Q6ZSA8 131 aa16.69■□□□□ 0.26
TRIM28-204ENST00000594806 UBE2D1P51668 147 aa16.68■□□□□ 0.26
TRIM28-204ENST00000594806 XGP55808 180 aa16.68■□□□□ 0.26
TRIM28-204ENST00000594806 LINC00173Q6ZV60 143 aa16.68■□□□□ 0.26
TRIM28-204ENST00000594806 ZNF561-AS1K7EIQ3 104 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms