RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CXCL6P80162 114 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 PRB3Q04118 309 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 ATP5G2Q06055 141 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 PMVKQ15126 192 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 AMTNQ6UX39 209 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 CLEC19AQ6UXS0 136 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 ZFP2Q6ZN57 461 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 TEN1Q86WV5 123 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 FAM223AQ8IWN6 122 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 C10orf126Q8N4M7 172 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 RNF182Q8N6D2 247 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 LINC01560Q8TB33 94 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 CNOT1A5YKK6 2376 aaKnown RBP2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 ZNF462Q96JM2 2506 aa2.65□□□□□ -1.99
SMCHD1-208ENST00000583344 PIEZO2Q9H5I5 2752 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 IGLV4-69A0A075B6H9 119 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 TRAV26-2A0A0B4J265 109 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 TRBV27A0A0K0K1C4 114 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 ZNF815PA8K554 130 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 A8MWV9 139 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 H3BUA1 57 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 H3BVH4 76 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 LGALS9O00182 355 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 LEPROTO15243 131 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV1-69P01742 117 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 SPINK8P0C7L1 97 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 ZNF688P0C7X2 276 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 P0DMU3 169 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 FAM231AP0DMU4 169 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 FAM231CP0DMU5 169 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 PRB4P10163 310 aaPredicted RBP2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 RNASE3P12724 160 aaKnown RBP2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 PSMB2P49721 201 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 APOC4P55056 127 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 HERVK_113P61574 105 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 PRR9Q5T870 116 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 Q6Q795 121 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 Q6ZQT7 251 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 Q6ZUT4 128 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 C14orf178Q8N769 122 aaPredicted RBP2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 C5orf56Q8N8D9 126 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 OR10J6PQ8NGY7 276 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 PLEKHB2Q96CS7 222 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 USMG5Q96IX5 58 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 AMELXQ99217 191 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 XCL2Q9UBD3 114 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 PRO1854Q9UHT4 67 aa2.64□□□□□ -1.99
SMCHD1-208ENST00000583344 DMXL2Q8TDJ6 3036 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 SMG1Q96Q15 3661 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 MALRD1Q5VYJ5 2156 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 IGLV8-61A0A075B6I0 122 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 A0A0B4J2C4 111 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-35A0A0C4DH35 117 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 LOC107984156A0A0G2JMH3 177 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 TRBV30A0A0K0K1B3 111 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 TMEM223A0PJW6 202 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 J3QQQ9 107 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 GNRH2O43555 120 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 TCL1BO95988 128 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-33P01772 117 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 SCGB1C2P0DMR2 95 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 S100A4P26447 101 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 RNASE4P34096 147 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 RHOHQ15669 191 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 PRR4Q16378 134 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 C9orf129Q5T035 196 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 SCGB1D4Q6XE38 83 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 ARL17AQ8IVW1 177 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 TMEM263Q8WUH6 116 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 RPL39LQ96EH5 51 aaKnown RBP2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 ODF3Q96PU9 254 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 EDA2RQ9HAV5 297 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 ERG28Q9UKR5 140 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 UFC1Q9Y3C8 167 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 PHLDA3Q9Y5J5 127 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 ZGRF1Q86YA3 2104 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 ARFGEF3Q5TH69 2177 aa2.63□□□□□ -1.99
SMCHD1-208ENST00000583344 CFAP46Q8IYW2 2715 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 TEX15Q9BXT5 2789 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 TEP1Q99973 2627 aaKnown RBP2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 CELSR3Q9NYQ7 3312 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 PLXNB1O43157 2135 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3OR16-8A0A075B7F1 116 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 TRAV41A0A0B4J266 112 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 IGHV3-66A0A0C4DH42 116 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 SDHAF1A6NFY7 115 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 G3V318 75 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 M0R2P5 195 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 NPFFO15130 113 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 SLC25A20O43772 301 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 OXTP01178 125 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 MT-ATP8P03928 68 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 KIAA0087Q14695 138 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 DEFB121Q5J5C9 76 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 ZFAND6Q6FIF0 208 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 ANKRD29Q8N6D5 301 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 TEX29Q8N6K0 151 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 NKAPP1Q8N9T2 125 aa2.62□□□□□ -1.99
SMCHD1-208ENST00000583344 ZNRF2Q8NHG8 242 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms