RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 BAALCQ8WXS3 180 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 AMELXQ99217 191 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 UPK3BQ9BT76 320 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 CDC42SE2Q9NRR3 84 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 APLNQ9ULZ1 77 aa10.49□□□□□ -0.73
SS18-215ENST00000580642 A0A087WX48 190 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 TMEM262E9PQX1 116 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 GAGE6Q13070 117 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 TEX43Q6ZNM6 134 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 ZNF664Q8N3J9 261 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 C2orf88Q9BSF0 95 aa10.48□□□□□ -0.73
SS18-215ENST00000580642 K7EP13 123 aa10.47□□□□□ -0.73
SS18-215ENST00000580642 CCL25O15444 150 aa10.47□□□□□ -0.73
SS18-215ENST00000580642 RBX1P62877 108 aa10.47□□□□□ -0.73
SS18-215ENST00000580642 LINC01545Q5VT33 79 aa10.47□□□□□ -0.73
SS18-215ENST00000580642 CST9LQ9H4G1 147 aa10.47□□□□□ -0.73
SS18-215ENST00000580642 FAM104AQ969W3 186 aa10.46□□□□□ -0.73
SS18-215ENST00000580642 PRSS29PA6NIE9 313 aa10.45□□□□□ -0.74
SS18-215ENST00000580642 SEC11AP67812 179 aa10.45□□□□□ -0.74
SS18-215ENST00000580642 ODF1Q14990 250 aa10.45□□□□□ -0.74
SS18-215ENST00000580642 LINC01556Q5JQF7 62 aa10.45□□□□□ -0.74
SS18-215ENST00000580642 F8VRH5 84 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 DNAH10OSP0CZ25 163 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 SMIM6P0DI80 62 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 PLNP26678 52 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 MPV17L2Q567V2 206 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 Q6ZUT4 128 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 FAM19A3Q7Z5A8 133 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 LINC00588Q9Y4M8 146 aa10.44□□□□□ -0.74
SS18-215ENST00000580642 DYNC2H1Q8NCM8 4307 aaKnown RBP10.44□□□□□ -0.74
SS18-215ENST00000580642 C3orf84H3BNL1 204 aa10.43□□□□□ -0.74
SS18-215ENST00000580642 SCGB1D1O95968 90 aa10.43□□□□□ -0.74
SS18-215ENST00000580642 CHTOPQ9Y3Y2 248 aaKnown RBP10.43□□□□□ -0.74
SS18-215ENST00000580642 IGLV4-60A0A075B6I1 120 aa10.42□□□□□ -0.74
SS18-215ENST00000580642 PYY3Q5JQD4 70 aa10.42□□□□□ -0.74
SS18-215ENST00000580642 Q8N976 141 aa10.42□□□□□ -0.74
SS18-215ENST00000580642 OPRPNQ99935 248 aaPredicted RBP10.42□□□□□ -0.74
SS18-215ENST00000580642 SIVA1O15304 175 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 DPM2O94777 84 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 UBE2D1P51668 147 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 NFE4Q86UQ8 179 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 WFDC10BQ8IUB3 73 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 PRR34Q9NV39 138 aa10.41□□□□□ -0.74
SS18-215ENST00000580642 TRAV9-2A0A087WT02 112 aa10.4□□□□□ -0.74
SS18-215ENST00000580642 TINCRA0A1B0GVN0 87 aa10.4□□□□□ -0.74
SS18-215ENST00000580642 H0Y8G0 127 aa10.4□□□□□ -0.74
SS18-215ENST00000580642 IGLC3P0DOY3 106 aa10.4□□□□□ -0.74
SS18-215ENST00000580642 C10orf126Q8N4M7 172 aa10.4□□□□□ -0.74
SS18-215ENST00000580642 MRPL35Q9NZE8 188 aaKnown RBP10.4□□□□□ -0.74
SS18-215ENST00000580642 IGKCP01834 107 aa10.39□□□□□ -0.75
SS18-215ENST00000580642 ANGP03950 147 aaKnown RBP10.39□□□□□ -0.75
SS18-215ENST00000580642 HERVK_113P63121 156 aa10.39□□□□□ -0.75
SS18-215ENST00000580642 DNAH7Q8WXX0 4024 aa10.38□□□□□ -0.75
SS18-215ENST00000580642 TRAV8-4A0A0B4J246 113 aa10.38□□□□□ -0.75
SS18-215ENST00000580642 SS18Q15532 418 aa10.38□□□□□ -0.75
SS18-215ENST00000580642 UBE2DNLQ8IWF7 75 aa10.38□□□□□ -0.75
SS18-215ENST00000580642 IGLV4-69A0A075B6H9 119 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 REG3AQ06141 175 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 MIAQ16674 131 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 ZFAND6Q6FIF0 208 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 LINC00269Q8N2A0 174 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 Q9H8V8 135 aa10.37□□□□□ -0.75
SS18-215ENST00000580642 IGLV5-45A0A087WSX0 123 aa10.36□□□□□ -0.75
SS18-215ENST00000580642 LINC00959A0A1B0GUT2 108 aa10.36□□□□□ -0.75
SS18-215ENST00000580642 RNASE13Q5GAN3 156 aaKnown RBP10.36□□□□□ -0.75
SS18-215ENST00000580642 GEMIN7Q9H840 131 aaKnown RBP10.36□□□□□ -0.75
SS18-215ENST00000580642 TRAV13-1A0A0B4J241 112 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 HSBP1L1C9JCN9 74 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 IGHV3-30P01768 117 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 IGHV3-33P01772 117 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 CRPP02741 224 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 IGHV3-30-3P0DP02 117 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 IGHV3-30-5P0DP03 117 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 LINC00242Q5T6M2 205 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 ZC2HC1BQ5TFG8 222 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 CHAC1Q9BUX1 264 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 KLK12Q9UKR0 248 aa10.35□□□□□ -0.75
SS18-215ENST00000580642 TRAV8-3A0A0A6YYJ7 113 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 A0A0J9YXV3 536 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 C11orf86A6NJI1 115 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 IBA57-AS1B1ANH7 110 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 H3BRM9 83 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 S100A12P80511 92 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 CASC10Q5T4H9 136 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 LINC01561Q8N1V8 128 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 PMCHL2Q9BQD1 86 aa10.34□□□□□ -0.75
SS18-215ENST00000580642 TTC32Q5I0X7 151 aa10.33□□□□□ -0.76
SS18-215ENST00000580642 HERVK_113P61574 105 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 CD164L2Q6UWJ8 174 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 ENHOQ6UWT2 76 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 LINC00518Q8N0U6 118 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 Q8N3U1 123 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 VAMP8Q9BV40 100 aa10.32□□□□□ -0.76
SS18-215ENST00000580642 IGHV3OR16-9A0A0B4J2B5 98 aa10.31□□□□□ -0.76
SS18-215ENST00000580642 ZNF22P17026 224 aaPredicted RBP10.31□□□□□ -0.76
SS18-215ENST00000580642 UBE2WQ96B02 151 aa10.31□□□□□ -0.76
SS18-215ENST00000580642 RMI2Q96E14 147 aa10.31□□□□□ -0.76
SS18-215ENST00000580642 TMEM170BQ5T4T1 132 aa10.3□□□□□ -0.76
SS18-215ENST00000580642 C12orf57Q99622 126 aa10.3□□□□□ -0.76
SS18-215ENST00000580642 COX11Q9Y6N1 276 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms