RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.37□□□□□ -0.43
VPS53-215ENST00000573028 TRAV13-1A0A0B4J241 112 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 CRLF1O75462 422 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 TRGV1A0A0A0MS02 117 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 TRAV4A0A0B4J268 109 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 COX6A2Q02221 97 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 UBE2WQ96B02 151 aa12.37□□□□□ -0.43
VPS53-215ENST00000573028 TRAV8-4A0A0B4J246 113 aa12.36□□□□□ -0.43
VPS53-215ENST00000573028 A0A1W2PRX2 142 aa12.36□□□□□ -0.43
VPS53-215ENST00000573028 PEMTQ9UBM1 199 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 H7C423 109 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 INSP01308 110 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 TMEM101Q96IK0 257 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 SPANXDQ9BXN6 97 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 Q9H8V8 135 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 SPANXCQ9NY87 97 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 GAGE2BQ13066 116 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 GAGE2EQ4V326 116 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 C11orf72Q8NBR9 251 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 GAGE2DQ9UEU5 116 aa12.35□□□□□ -0.43
VPS53-215ENST00000573028 J3QLI3 93 aa12.34□□□□□ -0.43
VPS53-215ENST00000573028 NIPBLQ6KC79 2804 aaeCLIP12.34□□□□□ -0.43
VPS53-215ENST00000573028 PRB1P04280 392 aa12.33□□□□□ -0.43
VPS53-215ENST00000573028 LINC00694P0DN24 101 aa12.33□□□□□ -0.44
VPS53-215ENST00000573028 EDA2RQ9HAV5 297 aa12.33□□□□□ -0.44
VPS53-215ENST00000573028 YAE1D1Q9NRH1 226 aa12.33□□□□□ -0.44
VPS53-215ENST00000573028 A0A096LNT2 108 aa12.32□□□□□ -0.44
VPS53-215ENST00000573028 RNF152Q8N8N0 203 aa12.32□□□□□ -0.44
VPS53-215ENST00000573028 CIRBPQ14011 172 aaKnown RBP12.32□□□□□ -0.44
VPS53-215ENST00000573028 C15orf53Q8NAA6 179 aa12.32□□□□□ -0.44
VPS53-215ENST00000573028 IGHV4-31P0DP07 118 aa12.31□□□□□ -0.44
VPS53-215ENST00000573028 DEFB114Q30KQ6 69 aa12.31□□□□□ -0.44
VPS53-215ENST00000573028 TTC32Q5I0X7 151 aa12.31□□□□□ -0.44
VPS53-215ENST00000573028 MEIG1Q5JSS6 88 aa12.31□□□□□ -0.44
VPS53-215ENST00000573028 STHQ8IWL8 128 aa12.31□□□□□ -0.44
VPS53-215ENST00000573028 KRTAP10-9P60411 292 aa12.3□□□□□ -0.44
VPS53-215ENST00000573028 GAGE12JA6NER3 117 aa12.3□□□□□ -0.44
VPS53-215ENST00000573028 GAGE4Q13068 117 aa12.3□□□□□ -0.44
VPS53-215ENST00000573028 GAGE5Q13069 117 aa12.3□□□□□ -0.44
VPS53-215ENST00000573028 CITED1Q99966 193 aa12.3□□□□□ -0.44
VPS53-215ENST00000573028 IGKV3OR2-268A0A0C4DH90 116 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 LINC00242Q5T6M2 205 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 RS1O15537 224 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 Q6ZTI0 123 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 PRIMA1Q86XR5 153 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 DNAJC30Q96LL9 226 aa12.29□□□□□ -0.44
VPS53-215ENST00000573028 M0QXV9 152 aa12.28□□□□□ -0.44
VPS53-215ENST00000573028 NDUFA1O15239 70 aa12.28□□□□□ -0.44
VPS53-215ENST00000573028 LINC00308Q8TCZ7 52 aa12.28□□□□□ -0.44
VPS53-215ENST00000573028 LST1O00453 97 aa12.28□□□□□ -0.44
VPS53-215ENST00000573028 ODF3L2Q3SX64 289 aa12.28□□□□□ -0.44
VPS53-215ENST00000573028 CITED2Q99967 270 aaPredicted RBP12.27□□□□□ -0.44
VPS53-215ENST00000573028 MTORP42345 2549 aa12.27□□□□□ -0.44
VPS53-215ENST00000573028 A8MTW9 85 aa12.27□□□□□ -0.45
VPS53-215ENST00000573028 RPL36AP83881 106 aaKnown RBP12.26□□□□□ -0.45
VPS53-215ENST00000573028 BEAN1Q3B7T3 259 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 C4orf3Q8WVX3 66 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 RPL36ALQ969Q0 106 aaKnown RBP12.26□□□□□ -0.45
VPS53-215ENST00000573028 IFITM1P13164 125 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 TIRAPP58753 221 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 HERVK_113P63121 156 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 C1orf158Q8N1D5 194 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 B5MCH6 92 aa12.26□□□□□ -0.45
VPS53-215ENST00000573028 H3BT86 120 aa12.25□□□□□ -0.45
VPS53-215ENST00000573028 FN1P02751 2386 aaKnown RBP12.25□□□□□ -0.45
VPS53-215ENST00000573028 SS18L2Q9UHA2 77 aa12.25□□□□□ -0.45
VPS53-215ENST00000573028 PIK3CD-AS1Q5SR53 167 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 Q8N2B8 174 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 NOP10Q9NPE3 64 aaKnown RBP12.24□□□□□ -0.45
VPS53-215ENST00000573028 NDUFV3P56181 108 aaKnown RBP12.24□□□□□ -0.45
VPS53-215ENST00000573028 SOSTDC1Q6X4U4 206 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 NTM-AS1Q6ZSK4 140 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 ACANP16112 2415 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 SMIM1B2RUZ4 78 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 FSHBP01225 129 aa12.24□□□□□ -0.45
VPS53-215ENST00000573028 TIMM17BO60830 172 aa12.23□□□□□ -0.45
VPS53-215ENST00000573028 Q96MF0 132 aa12.23□□□□□ -0.45
VPS53-215ENST00000573028 TOMM7Q9P0U1 55 aa12.23□□□□□ -0.45
VPS53-215ENST00000573028 NHLRC4P0CG21 123 aaPredicted RBP12.23□□□□□ -0.45
VPS53-215ENST00000573028 IGLV5-45A0A087WSX0 123 aa12.22□□□□□ -0.45
VPS53-215ENST00000573028 K7EQD1 137 aa12.22□□□□□ -0.45
VPS53-215ENST00000573028 SETXQ7Z333 2677 aaKnown RBP12.22□□□□□ -0.45
VPS53-215ENST00000573028 UBE2L6O14933 153 aa12.22□□□□□ -0.45
VPS53-215ENST00000573028 CR1P17927 2039 aa12.21□□□□□ -0.45
VPS53-215ENST00000573028 WFDC10AQ9H1F0 79 aa12.21□□□□□ -0.45
VPS53-215ENST00000573028 LOC100131303A0A0U1RQF7 123 aa12.21□□□□□ -0.46
VPS53-215ENST00000573028 TRGV2A0A075B6R0 118 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 IGLV5-39A0A0G2JS06 123 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 GAGE7O76087 117 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 GAGE12FP0CL80 117 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 GAGE12GP0CL81 117 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 GAGE12IP0CL82 117 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 ITPR3Q14573 2671 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 RPL35AP18077 110 aaKnown RBP12.2□□□□□ -0.46
VPS53-215ENST00000573028 GAGE6Q13070 117 aa12.2□□□□□ -0.46
VPS53-215ENST00000573028 PLA2G2AP14555 144 aa12.19□□□□□ -0.46
VPS53-215ENST00000573028 FLNAP21333 2647 aaKnown RBP12.19□□□□□ -0.46
VPS53-215ENST00000573028 CCDC179H3BU77 68 aa12.19□□□□□ -0.46
VPS53-215ENST00000573028 CDC42SE2Q9NRR3 84 aa12.18□□□□□ -0.46
VPS53-215ENST00000573028 USP24Q9UPU5 2620 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 305.8 ms