RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ABCA2Q9BZC7 2435 aa8.01□□□□□ -1.13
CLK3-226ENST00000569406 Q9HAA7 133 aa8.01□□□□□ -1.13
CLK3-226ENST00000569406 IGKV1-17P01599 117 aa8□□□□□ -1.13
CLK3-226ENST00000569406 RPL28P46779 137 aaKnown RBP8□□□□□ -1.13
CLK3-226ENST00000569406 CNFNQ9BYD5 112 aa8□□□□□ -1.13
CLK3-226ENST00000569406 I3L2K1 104 aa8□□□□□ -1.13
CLK3-226ENST00000569406 LEPROTO15243 131 aa8□□□□□ -1.13
CLK3-226ENST00000569406 DAD1P61803 113 aa8□□□□□ -1.13
CLK3-226ENST00000569406 TRBV12-3P01733 135 aa8□□□□□ -1.13
CLK3-226ENST00000569406 ODF3BA8MYP8 253 aa7.99□□□□□ -1.13
CLK3-226ENST00000569406 NOTCH2Q04721 2471 aa7.99□□□□□ -1.13
CLK3-226ENST00000569406 MYO18BQ8IUG5 2567 aa7.99□□□□□ -1.13
CLK3-226ENST00000569406 TSHBP01222 138 aa7.99□□□□□ -1.13
CLK3-226ENST00000569406 HOXD3P31249 432 aaPredicted RBP7.99□□□□□ -1.13
CLK3-226ENST00000569406 MRPS36P82909 103 aaKnown RBP7.99□□□□□ -1.13
CLK3-226ENST00000569406 DPM3Q9P2X0 92 aa7.99□□□□□ -1.13
CLK3-226ENST00000569406 IGSF10Q6WRI0 2623 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 A0A087WZ39 114 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 A8MZ25 164 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 F8W735 103 aaPredicted RBP7.98□□□□□ -1.13
CLK3-226ENST00000569406 HTN1P15515 57 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 CLEC19AQ6UXS0 136 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 TMEM61Q8N0U2 210 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 LYPD1Q8N2G4 141 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 ZNF625Q96I27 306 aaPredicted RBP7.98□□□□□ -1.13
CLK3-226ENST00000569406 ZNF575Q86XF7 245 aa7.98□□□□□ -1.13
CLK3-226ENST00000569406 K7EIM0 57 aa7.97□□□□□ -1.13
CLK3-226ENST00000569406 ZFP36P26651 326 aaKnown RBP7.97□□□□□ -1.13
CLK3-226ENST00000569406 PSMG3-AS1Q96PY0 264 aa7.97□□□□□ -1.13
CLK3-226ENST00000569406 OPRPNQ99935 248 aaPredicted RBP7.97□□□□□ -1.13
CLK3-226ENST00000569406 PKD1L2Q7Z442 2459 aa7.97□□□□□ -1.13
CLK3-226ENST00000569406 COX7A2LO14548 114 aa7.96□□□□□ -1.13
CLK3-226ENST00000569406 FAM229BQ4G0N7 80 aa7.96□□□□□ -1.13
CLK3-226ENST00000569406 FAM74A4Q5TZK3 123 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 ENHOQ6UWT2 76 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 IGKV3D-20A0A0C4DH25 116 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 IGKV3-20P01619 116 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 PHLDA3Q9Y5J5 127 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 NBPF19A0A087WUL8 3843 aa7.96□□□□□ -1.14
CLK3-226ENST00000569406 PRR15Q8IV56 129 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 NPBQ8NG41 125 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 MRPL53Q96EL3 112 aaKnown RBP7.95□□□□□ -1.14
CLK3-226ENST00000569406 Q9UF83 564 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 USP9XQ93008 2570 aaPredicted RBP7.95□□□□□ -1.14
CLK3-226ENST00000569406 Q8N6K4 173 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 VSIG2Q96IQ7 327 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 ZANQ9Y493 2812 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 SDHAF1A6NFY7 115 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 C15orf32Q32M92 178 aa7.95□□□□□ -1.14
CLK3-226ENST00000569406 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 Q6ZRU5 148 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 PLAC8L1A1L4L8 177 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 H3BRN7 92 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 H3BS24 57 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 ZNF876PQ49A33 203 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 RNF5Q99942 180 aa7.94□□□□□ -1.14
CLK3-226ENST00000569406 A0A0J9YXV3 536 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 IGIPA6NJ69 53 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 RBM12B-AS1Q9P1G2 102 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 C11orf21Q9P2W6 132 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 NDUFA12Q9UI09 145 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 CUBNO60494 3623 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 PRAC2D3DTV9 90 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 IGHV3-11P01762 117 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 IGHV3-30-3P0DP02 117 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 MIAQ16674 131 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 C11orf68Q9H3H3 251 aaKnown RBP7.93□□□□□ -1.14
CLK3-226ENST00000569406 AKAP9Q99996 3911 aa7.93□□□□□ -1.14
CLK3-226ENST00000569406 Q8N2B8 174 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 PRB1P04280 392 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 C9orf129Q5T035 196 aaKnown RBP7.92□□□□□ -1.14
CLK3-226ENST00000569406 C6orf223Q8N319 242 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 CCDC168Q8NDH2 2452 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 C19orf84I3L1E1 186 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 DEFB1P60022 68 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 CFHR3Q02985 330 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 LITAFQ99732 161 aa7.92□□□□□ -1.14
CLK3-226ENST00000569406 C22orf24Q9Y442 160 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 IGLV11-55A0A075B6I3 123 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 TRBV27A0A0K0K1C4 114 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 G3V318 75 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.91□□□□□ -1.14
CLK3-226ENST00000569406 TMEM141Q96I45 108 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 FAM218AQ96MZ4 157 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 MXRA5Q9NR99 2828 aa7.91□□□□□ -1.14
CLK3-226ENST00000569406 RNASE4P34096 147 aaKnown RBP7.9□□□□□ -1.14
CLK3-226ENST00000569406 LY6EQ16553 131 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 HIST2H2BCQ6DN03 193 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 HIST2H2BDQ6DRA6 164 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 IGHV1-69DA0A0B4J2H0 117 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 IGHV7-4-1A0A0J9YVY3 117 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 VMO1Q7Z5L0 202 aa7.9□□□□□ -1.14
CLK3-226ENST00000569406 APOC4P55056 127 aa7.9□□□□□ -1.15
CLK3-226ENST00000569406 BLCAPP62952 87 aa7.9□□□□□ -1.15
CLK3-226ENST00000569406 TRAV7A0A075B6U4 112 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 LRCOL1A6NCL2 159 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 SOCS3O14543 225 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 PDE6HQ13956 83 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 C1orf158Q8N1D5 194 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 EPG5Q9HCE0 2579 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms