RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NAT8BQ9UHF3 227 aa9.41□□□□□ -0.9
CLN3-236ENST00000568558 RAB4AP20338 218 aa9.4□□□□□ -0.9
CLN3-236ENST00000568558 RIGQ13278 110 aa9.4□□□□□ -0.9
CLN3-236ENST00000568558 AMMECR1LQ6DCA0 310 aa9.4□□□□□ -0.9
CLN3-236ENST00000568558 PRSS3P2Q8NHM4 247 aa9.4□□□□□ -0.9
CLN3-236ENST00000568558 LRP2P98164 4655 aa9.39□□□□□ -0.91
CLN3-236ENST00000568558 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.39□□□□□ -0.91
CLN3-236ENST00000568558 GVQW2A0A096LPI5 108 aaPredicted RBP9.39□□□□□ -0.91
CLN3-236ENST00000568558 IGKV2-24A0A0C4DH68 120 aa9.39□□□□□ -0.91
CLN3-236ENST00000568558 IGKV2-29A2NJV5 120 aaPredicted RBP9.39□□□□□ -0.91
CLN3-236ENST00000568558 H7C423 109 aa9.39□□□□□ -0.91
CLN3-236ENST00000568558 APCSP02743 223 aa9.39□□□□□ -0.91
CLN3-236ENST00000568558 MAJINQ3KP22 176 aa9.39□□□□□ -0.91
CLN3-236ENST00000568558 RNASEKQ6P5S7 137 aaKnown RBP9.39□□□□□ -0.91
CLN3-236ENST00000568558 SMKR1H3BMG3 65 aa9.38□□□□□ -0.91
CLN3-236ENST00000568558 FGF6P10767 208 aa9.38□□□□□ -0.91
CLN3-236ENST00000568558 ADCYAP1P18509 176 aa9.38□□□□□ -0.91
CLN3-236ENST00000568558 SDHAF1A6NFY7 115 aa9.37□□□□□ -0.91
CLN3-236ENST00000568558 CAMPP49913 170 aa9.37□□□□□ -0.91
CLN3-236ENST00000568558 PRR3P79522 188 aaKnown RBP9.37□□□□□ -0.91
CLN3-236ENST00000568558 FOXI1Q12951 378 aa9.37□□□□□ -0.91
CLN3-236ENST00000568558 MRPL54Q6P161 138 aaKnown RBP9.37□□□□□ -0.91
CLN3-236ENST00000568558 STPG4Q8N801 248 aa9.37□□□□□ -0.91
CLN3-236ENST00000568558 A0A096LNI7 61 aa9.36□□□□□ -0.91
CLN3-236ENST00000568558 TRBV6-5A0A0K0K1A5 114 aa9.36□□□□□ -0.91
CLN3-236ENST00000568558 A0A1B0GXF2 115 aa9.36□□□□□ -0.91
CLN3-236ENST00000568558 OR5A1Q8NGJ0 315 aa9.36□□□□□ -0.91
CLN3-236ENST00000568558 MRAP2Q96G30 205 aa9.36□□□□□ -0.91
CLN3-236ENST00000568558 ZNF25P17030 456 aaPredicted RBP9.35□□□□□ -0.91
CLN3-236ENST00000568558 PNRC1Q12796 327 aaPredicted RBP9.35□□□□□ -0.91
CLN3-236ENST00000568558 MRPL51Q4U2R6 128 aaKnown RBP9.35□□□□□ -0.91
CLN3-236ENST00000568558 NRACQ8N912 160 aa9.35□□□□□ -0.91
CLN3-236ENST00000568558 TMEM218A2RU14 115 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 I3L3M4 83 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 FAM104BQ5XKR9 115 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 UQCC3Q6UW78 93 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 LINC01600Q96MT4 127 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 ST20Q9HBF5 79 aa9.34□□□□□ -0.91
CLN3-236ENST00000568558 LINC00959A0A1B0GUT2 108 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 PPP1R2P9O14990 202 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 TSHBP01222 138 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 ESDP10768 282 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 PMCHP20382 165 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 XCL1P47992 114 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 POLR2KP53803 58 aaKnown RBP9.33□□□□□ -0.92
CLN3-236ENST00000568558 HBBP68871 147 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 COMMD7Q86VX2 200 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 TMEM101Q96IK0 257 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 BTF3L4Q96K17 158 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 TMEM242Q9NWH2 141 aa9.33□□□□□ -0.92
CLN3-236ENST00000568558 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 A0A1B0GW15 77 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 CCL25O15444 150 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 MT-ND4LP03901 98 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 LINC00526Q96FQ7 95 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 PKIGQ9Y2B9 76 aa9.32□□□□□ -0.92
CLN3-236ENST00000568558 F8W036 122 aa9.31□□□□□ -0.92
CLN3-236ENST00000568558 ANAPC16Q96DE5 110 aa9.31□□□□□ -0.92
CLN3-236ENST00000568558 CARD19Q96LW7 228 aa9.31□□□□□ -0.92
CLN3-236ENST00000568558 LINC00474Q9P2X8 69 aa9.31□□□□□ -0.92
CLN3-236ENST00000568558 TRBV27A0A0K0K1C4 114 aa9.3□□□□□ -0.92
CLN3-236ENST00000568558 A0A0J9YXV3 536 aa9.29□□□□□ -0.92
CLN3-236ENST00000568558 LINC00862A6NCI5 91 aa9.29□□□□□ -0.92
CLN3-236ENST00000568558 SUMO2P61956 95 aaKnown RBP9.29□□□□□ -0.92
CLN3-236ENST00000568558 ATP5L2Q7Z4Y8 100 aa9.29□□□□□ -0.92
CLN3-236ENST00000568558 MRPL52Q86TS9 123 aaKnown RBP9.29□□□□□ -0.92
CLN3-236ENST00000568558 CDC42SE2Q9NRR3 84 aa9.29□□□□□ -0.92
CLN3-236ENST00000568558 D6R8Y8 96 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 NPYP01303 97 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 S100A8P05109 93 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 CKS2P33552 79 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 ODF1Q14990 250 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 SS18Q15532 418 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 CD164L2Q6UWJ8 174 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 SPINK6Q6UWN8 80 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 SEC11CQ9BY50 192 aa9.28□□□□□ -0.92
CLN3-236ENST00000568558 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
CLN3-236ENST00000568558 VCYO14598 125 aa9.27□□□□□ -0.93
CLN3-236ENST00000568558 TNFRSF6BO95407 300 aa9.27□□□□□ -0.93
CLN3-236ENST00000568558 SYCNQ0VAF6 134 aa9.27□□□□□ -0.93
CLN3-236ENST00000568558 ZNF664Q8N3J9 261 aa9.27□□□□□ -0.93
CLN3-236ENST00000568558 RNF213Q63HN8 5207 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 TRBV24-1A0A075B6N3 115 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 C7orf77A4D0Y5 90 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 PPP1R17O96001 155 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 KRTAP10-8P60410 259 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 SRSF9Q13242 221 aaKnown RBP eCLIP9.26□□□□□ -0.93
CLN3-236ENST00000568558 REG3GQ6UW15 175 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 Q6ZRP5 223 aa9.26□□□□□ -0.93
CLN3-236ENST00000568558 C10orf91Q5T1B1 145 aa9.25□□□□□ -0.93
CLN3-236ENST00000568558 C20orf78Q9BR46 151 aa9.25□□□□□ -0.93
CLN3-236ENST00000568558 FCER1GP30273 86 aa9.24□□□□□ -0.93
CLN3-236ENST00000568558 PTTG1IPP53801 180 aa9.24□□□□□ -0.93
CLN3-236ENST00000568558 SMIM2Q9BVW6 85 aa9.24□□□□□ -0.93
CLN3-236ENST00000568558 IGLV4-69A0A075B6H9 119 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 LOC107984640A0A0U1RRK4 108 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 RPL32P62910 135 aaKnown RBP9.23□□□□□ -0.93
CLN3-236ENST00000568558 GAGE2BQ13066 116 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 TMEM136Q6ZRR5 245 aa9.23□□□□□ -0.93
CLN3-236ENST00000568558 ORMDL3Q8N138 153 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms