RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GAGE13Q4V321 117 aa14.43□□□□□ -0.1
CLN3-230ENST00000568076 TRGV2A0A075B6R0 118 aa14.42□□□□□ -0.1
CLN3-230ENST00000568076 IGHV3-30-3P0DP02 117 aa14.42□□□□□ -0.1
CLN3-230ENST00000568076 DAZ4Q86SG3 579 aaKnown RBP14.42□□□□□ -0.1
CLN3-230ENST00000568076 TIMM21Q9BVV7 248 aa14.42□□□□□ -0.1
CLN3-230ENST00000568076 DAZ3Q9NR90 486 aaKnown RBP14.42□□□□□ -0.1
CLN3-230ENST00000568076 TRAV8-3A0A0A6YYJ7 113 aa14.41□□□□□ -0.1
CLN3-230ENST00000568076 IGHV3-30P01768 117 aa14.41□□□□□ -0.1
CLN3-230ENST00000568076 IGHV3-30-5P0DP03 117 aa14.41□□□□□ -0.1
CLN3-230ENST00000568076 UBE2D1P51668 147 aa14.41□□□□□ -0.1
CLN3-230ENST00000568076 HIVEP1P15822 2718 aa14.41□□□□□ -0.1
CLN3-230ENST00000568076 C10orf126Q8N4M7 172 aa14.4□□□□□ -0.1
CLN3-230ENST00000568076 LOC100131303A0A0U1RQF7 123 aa14.39□□□□□ -0.11
CLN3-230ENST00000568076 SBSPONQ8IVN8 264 aa14.39□□□□□ -0.11
CLN3-230ENST00000568076 TMEM238LA0A1B0GVL6 79 aa14.38□□□□□ -0.11
CLN3-230ENST00000568076 A6NJY4 79 aa14.38□□□□□ -0.11
CLN3-230ENST00000568076 IGHV1-58A0A0C4DH39 117 aa14.38□□□□□ -0.11
CLN3-230ENST00000568076 TENM1Q9UKZ4 2725 aa14.37□□□□□ -0.11
CLN3-230ENST00000568076 TRBV6-4A0A1B0GX49 114 aa14.37□□□□□ -0.11
CLN3-230ENST00000568076 DGAT2L7PQ6IED9 249 aa14.37□□□□□ -0.11
CLN3-230ENST00000568076 SPINK8P0C7L1 97 aa14.36□□□□□ -0.11
CLN3-230ENST00000568076 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.36□□□□□ -0.11
CLN3-230ENST00000568076 A8MZ25 164 aa14.36□□□□□ -0.11
CLN3-230ENST00000568076 CRLF1O75462 422 aa14.36□□□□□ -0.11
CLN3-230ENST00000568076 INSL3P51460 131 aa14.36□□□□□ -0.11
CLN3-230ENST00000568076 A0A0J9YXY3 114 aa14.35□□□□□ -0.11
CLN3-230ENST00000568076 CIDEAO60543 219 aa14.35□□□□□ -0.11
CLN3-230ENST00000568076 FHL2Q14192 279 aa14.35□□□□□ -0.11
CLN3-230ENST00000568076 C9orf66Q5T8R8 295 aa14.35□□□□□ -0.11
CLN3-230ENST00000568076 VSIG2Q96IQ7 327 aa14.35□□□□□ -0.11
CLN3-230ENST00000568076 TRGV4A0A0C4DH28 118 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 GEMIN7Q9H840 131 aaKnown RBP14.34□□□□□ -0.11
CLN3-230ENST00000568076 PGPEP1Q9NXJ5 209 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 CDKN2A-AS1Q9UH64 79 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 CSDC2Q9Y534 153 aaKnown RBP14.34□□□□□ -0.11
CLN3-230ENST00000568076 IGLV5-45A0A087WSX0 123 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 TIRAPP58753 221 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 COX6A2Q02221 97 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 GTSF1LQ9H1H1 148 aa14.34□□□□□ -0.11
CLN3-230ENST00000568076 APOMO95445 188 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 CFC1BP0CG36 223 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 CFC1P0CG37 223 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 OCIAD2Q56VL3 154 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 CITED1Q99966 193 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 X6R8D5 127 aa14.33□□□□□ -0.12
CLN3-230ENST00000568076 LINC00242Q5T6M2 205 aa14.32□□□□□ -0.12
CLN3-230ENST00000568076 LITAFQ99732 161 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 CDC42SE2Q9NRR3 84 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 NDUFA12Q9UI09 145 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 TSPAN13O95857 204 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 RBX1P62877 108 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 LINC00612Q8N6U2 182 aa14.31□□□□□ -0.12
CLN3-230ENST00000568076 FAM19A3Q7Z5A8 133 aa14.3□□□□□ -0.12
CLN3-230ENST00000568076 KIR2DL5BQ8NHK3 375 aa14.3□□□□□ -0.12
CLN3-230ENST00000568076 TMEM243Q9BU79 118 aa14.3□□□□□ -0.12
CLN3-230ENST00000568076 TMEM238C9JI98 176 aa14.29□□□□□ -0.12
CLN3-230ENST00000568076 DEFB130BP0DP73 79 aa14.29□□□□□ -0.12
CLN3-230ENST00000568076 DEFB130AP0DP74 79 aa14.29□□□□□ -0.12
CLN3-230ENST00000568076 MUSTN1Q8IVN3 82 aa14.29□□□□□ -0.12
CLN3-230ENST00000568076 EIF4EBP3O60516 100 aaPredicted RBP14.29□□□□□ -0.12
CLN3-230ENST00000568076 A4D1N5 150 aa14.28□□□□□ -0.12
CLN3-230ENST00000568076 HERVK_113P63121 156 aa14.28□□□□□ -0.12
CLN3-230ENST00000568076 ZFAND6Q6FIF0 208 aa14.28□□□□□ -0.12
CLN3-230ENST00000568076 TMEM101Q96IK0 257 aa14.28□□□□□ -0.12
CLN3-230ENST00000568076 TRAV13-1A0A0B4J241 112 aa14.27□□□□□ -0.12
CLN3-230ENST00000568076 H3BMG7 143 aa14.27□□□□□ -0.12
CLN3-230ENST00000568076 ADAMTSL4-AS1Q5T5F5 129 aa14.27□□□□□ -0.13
CLN3-230ENST00000568076 UBE2L6O14933 153 aa14.26□□□□□ -0.13
CLN3-230ENST00000568076 IGLV5-39A0A0G2JS06 123 aa14.25□□□□□ -0.13
CLN3-230ENST00000568076 SFTA2Q6UW10 78 aa14.25□□□□□ -0.13
CLN3-230ENST00000568076 SMIM9A6NGZ8 99 aa14.24□□□□□ -0.13
CLN3-230ENST00000568076 SMAGPQ0VAQ4 97 aa14.24□□□□□ -0.13
CLN3-230ENST00000568076 NBEAL2Q6ZNJ1 2754 aa14.24□□□□□ -0.13
CLN3-230ENST00000568076 TRBV6-8A0A0A6YYG3 113 aa14.23□□□□□ -0.13
CLN3-230ENST00000568076 RPL24P83731 157 aaKnown RBP14.23□□□□□ -0.13
CLN3-230ENST00000568076 PRO1854Q9UHT4 67 aa14.23□□□□□ -0.13
CLN3-230ENST00000568076 ATRQ13535 2644 aa14.23□□□□□ -0.13
CLN3-230ENST00000568076 H7C423 109 aa14.23□□□□□ -0.13
CLN3-230ENST00000568076 TEP1Q99973 2627 aaKnown RBP14.22□□□□□ -0.13
CLN3-230ENST00000568076 SMIM1B2RUZ4 78 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 GAGE6Q13070 117 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 SPANXDQ9BXN6 97 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 SPANXCQ9NY87 97 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 NDUFA1O15239 70 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 DEFB135Q30KP9 77 aa14.22□□□□□ -0.13
CLN3-230ENST00000568076 LOC107984156A0A0G2JMH3 177 aa14.21□□□□□ -0.13
CLN3-230ENST00000568076 F5H768 121 aa14.21□□□□□ -0.13
CLN3-230ENST00000568076 RNF151Q2KHN1 245 aa14.21□□□□□ -0.13
CLN3-230ENST00000568076 ARL17AQ8IVW1 177 aa14.21□□□□□ -0.13
CLN3-230ENST00000568076 A0A0B4J2C4 111 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 WFDC2Q14508 124 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 FAM222AQ5U5X8 452 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 PRO0461Q9UI25 63 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 TRRAPQ9Y4A5 3859 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 IGLV4-60A0A075B6I1 120 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 F8W1H4 67 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 K7ERU9 68 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 MIAQ16674 131 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 MTURNQ8N3F0 131 aa14.2□□□□□ -0.14
CLN3-230ENST00000568076 WFDC9Q8NEX5 89 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms