RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 PRELID3AQ96N28 172 aa6.02□□□□□ -1.45
VPS35-206ENST00000565228 CDC42SE2Q9NRR3 84 aa6.02□□□□□ -1.45
VPS35-206ENST00000565228 UBE2D4Q9Y2X8 147 aa6.02□□□□□ -1.45
VPS35-206ENST00000565228 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.01□□□□□ -1.45
VPS35-206ENST00000565228 IGKV3OR2-268A0A0C4DH90 116 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 LOC389332A0A1B0GUA5 103 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 PSCAO43653 123 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 SLPIP03973 132 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 XGP55808 180 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 ELOBQ15370 118 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 RHEBQ15382 184 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 MIAQ16674 131 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 MRPL52Q86TS9 123 aaKnown RBP6.01□□□□□ -1.45
VPS35-206ENST00000565228 ORMDL3Q8N138 153 aa6.01□□□□□ -1.45
VPS35-206ENST00000565228 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.01□□□□□ -1.45
VPS35-206ENST00000565228 USP17L23D6RBM5 183 aa6□□□□□ -1.45
VPS35-206ENST00000565228 H7C423 109 aa6□□□□□ -1.45
VPS35-206ENST00000565228 PHOX2AO14813 284 aa6□□□□□ -1.45
VPS35-206ENST00000565228 UBE2L6O14933 153 aa6□□□□□ -1.45
VPS35-206ENST00000565228 S100A8P05109 93 aa6□□□□□ -1.45
VPS35-206ENST00000565228 PRSS1P07477 247 aa6□□□□□ -1.45
VPS35-206ENST00000565228 Q0VG73 95 aa6□□□□□ -1.45
VPS35-206ENST00000565228 ZC2HC1BQ5TFG8 222 aa6□□□□□ -1.45
VPS35-206ENST00000565228 RNASEKQ6P5S7 137 aaKnown RBP6□□□□□ -1.45
VPS35-206ENST00000565228 Q6ZUT4 128 aa6□□□□□ -1.45
VPS35-206ENST00000565228 URB1-AS1Q96HZ7 61 aa6□□□□□ -1.45
VPS35-206ENST00000565228 TM2D2Q9BX73 214 aa6□□□□□ -1.45
VPS35-206ENST00000565228 TRAV9-1A0A075B6T8 112 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 HLA-DQA1P01909 254 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 CRPP02741 224 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 PPBPP02775 128 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 IFI27P40305 119 aaPredicted RBP5.99□□□□□ -1.45
VPS35-206ENST00000565228 FOXI1Q12951 378 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 CBLN2Q8IUK8 224 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 C15orf56Q8N910 161 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 ALKBH7Q9BT30 221 aaPredicted RBP5.99□□□□□ -1.45
VPS35-206ENST00000565228 C1orf43Q9BWL3 253 aa5.99□□□□□ -1.45
VPS35-206ENST00000565228 LINC00959A0A1B0GUT2 108 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 GAGE12HA6NDE8 117 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 PPP1R17O96001 155 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 FCER1GP30273 86 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 PKIAP61925 76 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 AMMECR1LQ6DCA0 310 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 OR5A1Q8NGJ0 315 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 CHCHD10Q8WYQ3 142 aaPredicted RBP5.98□□□□□ -1.45
VPS35-206ENST00000565228 GNB1LQ9BYB4 327 aa5.98□□□□□ -1.45
VPS35-206ENST00000565228 IGLV5-52A0A0A0MRZ9 124 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 ZNF25P17030 456 aaPredicted RBP5.97□□□□□ -1.45
VPS35-206ENST00000565228 LINC00173Q6ZV60 143 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 SVBPQ8N300 66 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 ZNF664Q8N3J9 261 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 Q8N8P6 123 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 RMI2Q96E14 147 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 KIR2DL4Q99706 377 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 MRPL18Q9H0U6 180 aaKnown RBP5.97□□□□□ -1.45
VPS35-206ENST00000565228 MYCBP2O75592 4640 aa5.97□□□□□ -1.45
VPS35-206ENST00000565228 TRAV8-4A0A0B4J246 113 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 PANO1I0J062 215 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 CCL25O15444 150 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 SNAPINO95295 136 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 GCSHP23434 173 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 CDPF1Q6NVV7 123 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 TIMM21Q9BVV7 248 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 MAP1LC3AQ9H492 121 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 LAMTOR2Q9Y2Q5 125 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 CSDC2Q9Y534 153 aaKnown RBP5.96□□□□□ -1.46
VPS35-206ENST00000565228 COX11Q9Y6N1 276 aa5.96□□□□□ -1.46
VPS35-206ENST00000565228 IGLV4-3A0A075B6K6 122 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 A0A096LNJ9 63 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 LINC01546A6NGU7 62 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 CDK2AP2O75956 126 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 S100PP25815 95 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 XCL1P47992 114 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 Q6ZSA8 131 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 LINC00526Q96FQ7 95 aa5.95□□□□□ -1.46
VPS35-206ENST00000565228 IGIPA6NJ69 53 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 EREGO14944 169 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 SCO1O75880 301 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 COX6A2Q02221 97 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 FABP9Q0Z7S8 132 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 HIGD2BQ4VC39 106 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 C2orf66Q6UXQ4 117 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 PKHD1L1Q86WI1 4243 aa5.94□□□□□ -1.46
VPS35-206ENST00000565228 TRAV13-1A0A0B4J241 112 aa5.93□□□□□ -1.46
VPS35-206ENST00000565228 MRPS36P82909 103 aaKnown RBP5.93□□□□□ -1.46
VPS35-206ENST00000565228 C18orf32Q8TCD1 76 aa5.93□□□□□ -1.46
VPS35-206ENST00000565228 TMEM101Q96IK0 257 aa5.93□□□□□ -1.46
VPS35-206ENST00000565228 TRAPPC1Q9Y5R8 145 aa5.93□□□□□ -1.46
VPS35-206ENST00000565228 CD164L2Q6UWJ8 174 aa5.92□□□□□ -1.46
VPS35-206ENST00000565228 AMELXQ99217 191 aa5.92□□□□□ -1.46
VPS35-206ENST00000565228 NXT2Q9NPJ8 142 aaKnown RBP5.92□□□□□ -1.46
VPS35-206ENST00000565228 SPANXA1Q9NS26 97 aa5.92□□□□□ -1.46
VPS35-206ENST00000565228 PYGO1Q9Y3Y4 419 aa5.92□□□□□ -1.46
VPS35-206ENST00000565228 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.92□□□□□ -1.46
VPS35-206ENST00000565228 IGHV3OR16-9A0A0B4J2B5 98 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 COLCA2A8K830 154 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 SMR3BP02814 79 aaPredicted RBP5.91□□□□□ -1.46
VPS35-206ENST00000565228 MT-ND6P03923 174 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 RAB5AP20339 215 aa5.91□□□□□ -1.46
VPS35-206ENST00000565228 LINC00310P59036 64 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms