RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 FAM210AQ96ND0 272 aa9.86□□□□□ -0.83
CLK3-211ENST00000563297 IGHV1-58A0A0C4DH39 117 aa9.85□□□□□ -0.83
CLK3-211ENST00000563297 CEBPGP53567 150 aa9.85□□□□□ -0.83
CLK3-211ENST00000563297 TMEM191AQ9H0A3 160 aa9.85□□□□□ -0.83
CLK3-211ENST00000563297 CDC42SE2Q9NRR3 84 aa9.85□□□□□ -0.83
CLK3-211ENST00000563297 TMEM242Q9NWH2 141 aa9.85□□□□□ -0.83
CLK3-211ENST00000563297 A0A1B0GUT8 65 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 RAB4AP20338 218 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 PRR3P79522 188 aaKnown RBP9.84□□□□□ -0.83
CLK3-211ENST00000563297 IFITM2Q01629 132 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 MRPL52Q86TS9 123 aaKnown RBP9.84□□□□□ -0.83
CLK3-211ENST00000563297 BORCS7Q96B45 105 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 MRAP2Q96G30 205 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 LINC01600Q96MT4 127 aa9.84□□□□□ -0.83
CLK3-211ENST00000563297 TRBV27A0A0K0K1C4 114 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 HIGD1CA8MV81 97 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 RAB14P61106 215 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 SS18Q15532 418 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 ZNF664Q8N3J9 261 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 TSKUQ8WUA8 353 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 LINC00474Q9P2X8 69 aa9.83□□□□□ -0.84
CLK3-211ENST00000563297 CD164L2Q6UWJ8 174 aa9.82□□□□□ -0.84
CLK3-211ENST00000563297 LINC01551Q86U37 167 aa9.82□□□□□ -0.84
CLK3-211ENST00000563297 CARD19Q96LW7 228 aa9.82□□□□□ -0.84
CLK3-211ENST00000563297 SMIM7Q9BQ49 75 aa9.82□□□□□ -0.84
CLK3-211ENST00000563297 OSTCQ9NRP0 149 aa9.82□□□□□ -0.84
CLK3-211ENST00000563297 AMN1Q8IY45 258 aa9.81□□□□□ -0.84
CLK3-211ENST00000563297 EIF5A2Q9GZV4 153 aaKnown RBP9.81□□□□□ -0.84
CLK3-211ENST00000563297 C7orf77A4D0Y5 90 aa9.8□□□□□ -0.84
CLK3-211ENST00000563297 ZNF561-AS1K7EIQ3 104 aa9.8□□□□□ -0.84
CLK3-211ENST00000563297 SYCNQ0VAF6 134 aa9.8□□□□□ -0.84
CLK3-211ENST00000563297 PKIGQ9Y2B9 76 aa9.8□□□□□ -0.84
CLK3-211ENST00000563297 ZNF727A8MUV8 499 aa9.79□□□□□ -0.84
CLK3-211ENST00000563297 SMKR1H3BMG3 65 aa9.79□□□□□ -0.84
CLK3-211ENST00000563297 VCYO14598 125 aa9.79□□□□□ -0.84
CLK3-211ENST00000563297 SRP19P09132 144 aaKnown RBP9.78□□□□□ -0.84
CLK3-211ENST00000563297 SRSF9Q13242 221 aaKnown RBP eCLIP9.78□□□□□ -0.84
CLK3-211ENST00000563297 SPINK6Q6UWN8 80 aa9.78□□□□□ -0.84
CLK3-211ENST00000563297 NUP35Q8NFH5 326 aa9.78□□□□□ -0.84
CLK3-211ENST00000563297 CSDC2Q9Y534 153 aaKnown RBP9.78□□□□□ -0.84
CLK3-211ENST00000563297 V9GYV3 84 aa9.78□□□□□ -0.84
CLK3-211ENST00000563297 IGLV4-69A0A075B6H9 119 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 C1orf196B1AJZ1 125 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 CAMPP49913 170 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 KRTAP10-8P60410 259 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 RIGQ13278 110 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 ODF1Q14990 250 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 NRACQ8N912 160 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 LRP2P98164 4655 aa9.77□□□□□ -0.85
CLK3-211ENST00000563297 A0A0J9YXV3 536 aa9.76□□□□□ -0.85
CLK3-211ENST00000563297 FCER1GP30273 86 aa9.76□□□□□ -0.85
CLK3-211ENST00000563297 PTTG1IPP53801 180 aa9.76□□□□□ -0.85
CLK3-211ENST00000563297 Q6ZRP5 223 aa9.76□□□□□ -0.85
CLK3-211ENST00000563297 UBE2D4Q9Y2X8 147 aa9.76□□□□□ -0.85
CLK3-211ENST00000563297 LOC107984640A0A0U1RRK4 108 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 COX7A2LO14548 114 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 PPP1R17O96001 155 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 MALP21145 153 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 SUMO2P61956 95 aaKnown RBP9.75□□□□□ -0.85
CLK3-211ENST00000563297 GAGE2BQ13066 116 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 RNASE13Q5GAN3 156 aaKnown RBP9.75□□□□□ -0.85
CLK3-211ENST00000563297 ISOC2Q96AB3 205 aa9.75□□□□□ -0.85
CLK3-211ENST00000563297 A0A1W2PNN7 141 aa9.74□□□□□ -0.85
CLK3-211ENST00000563297 REG3GQ6UW15 175 aa9.74□□□□□ -0.85
CLK3-211ENST00000563297 KIR2DL4Q99706 377 aa9.74□□□□□ -0.85
CLK3-211ENST00000563297 TRAV13-1A0A0B4J241 112 aa9.73□□□□□ -0.85
CLK3-211ENST00000563297 SMAGPQ0VAQ4 97 aa9.73□□□□□ -0.85
CLK3-211ENST00000563297 TMEM241Q24JQ0 296 aa9.73□□□□□ -0.85
CLK3-211ENST00000563297 MRPL51Q4U2R6 128 aaKnown RBP9.73□□□□□ -0.85
CLK3-211ENST00000563297 CLLU1Q5K131 121 aa9.73□□□□□ -0.85
CLK3-211ENST00000563297 FAM104BQ5XKR9 115 aa9.73□□□□□ -0.85
CLK3-211ENST00000563297 RPL23P62829 140 aaKnown RBP9.72□□□□□ -0.85
CLK3-211ENST00000563297 C5orf38Q86SI9 138 aa9.72□□□□□ -0.85
CLK3-211ENST00000563297 C2orf48Q96LS8 159 aa9.72□□□□□ -0.85
CLK3-211ENST00000563297 CAMK2N2Q96S95 79 aa9.72□□□□□ -0.85
CLK3-211ENST00000563297 TIMM21Q9BVV7 248 aa9.72□□□□□ -0.85
CLK3-211ENST00000563297 NAT8BQ9UHF3 227 aa9.72□□□□□ -0.85
CLK3-211ENST00000563297 PPP1R2P9O14990 202 aa9.71□□□□□ -0.86
CLK3-211ENST00000563297 FAM74A3Q4VXF1 159 aa9.71□□□□□ -0.86
CLK3-211ENST00000563297 Q6ZUT4 128 aa9.71□□□□□ -0.86
CLK3-211ENST00000563297 TRBV24-1A0A075B6N3 115 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 SMIM27A0A1W2PRY6 76 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 LINC00862A6NCI5 91 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.7□□□□□ -0.86
CLK3-211ENST00000563297 APOMO95445 188 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 NDUFA5Q16718 116 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 TMEM18Q96B42 140 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 C20orf78Q9BR46 151 aa9.7□□□□□ -0.86
CLK3-211ENST00000563297 C9orf116Q5BN46 136 aaPredicted RBP9.69□□□□□ -0.86
CLK3-211ENST00000563297 FAM104AQ969W3 186 aa9.69□□□□□ -0.86
CLK3-211ENST00000563297 OPRPNQ99935 248 aaPredicted RBP9.69□□□□□ -0.86
CLK3-211ENST00000563297 C9JQL5 133 aa9.68□□□□□ -0.86
CLK3-211ENST00000563297 CKS2P33552 79 aa9.68□□□□□ -0.86
CLK3-211ENST00000563297 RPL39P62891 51 aaKnown RBP9.68□□□□□ -0.86
CLK3-211ENST00000563297 RPL32P62910 135 aaKnown RBP9.68□□□□□ -0.86
CLK3-211ENST00000563297 ADIRFQ15847 76 aa9.68□□□□□ -0.86
CLK3-211ENST00000563297 RNF151Q2KHN1 245 aa9.68□□□□□ -0.86
CLK3-211ENST00000563297 RNF213Q63HN8 5207 aa9.68□□□□□ -0.86
CLK3-211ENST00000563297 TNFRSF6BO95407 300 aa9.67□□□□□ -0.86
CLK3-211ENST00000563297 NAT8Q9UHE5 227 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 198 ms