RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TIMM17AQ99595 171 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 KRTAP1-5Q9BYS1 174 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 UBE2D3P61077 147 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 UBE2D2P62837 147 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 SMAGPQ0VAQ4 97 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 LINC00173Q6ZV60 143 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 NEGR1Q7Z3B1 354 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 SCGB3A1Q96QR1 104 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 PRO0255Q9UI72 69 aa9.63□□□□□ -0.87
LDLR-213ENST00000560502 C20orf203Q8NBC4 194 aa9.62□□□□□ -0.87
LDLR-213ENST00000560502 GTSF1LQ9H1H1 148 aa9.62□□□□□ -0.87
LDLR-213ENST00000560502 HHLA3Q9XRX5 114 aa9.62□□□□□ -0.87
LDLR-213ENST00000560502 TRAV12-1A0A0B4J245 112 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 LINC00694P0DN24 101 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 CRYBA4P53673 196 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 PAPPA-AS1Q5QFB9 102 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 Q6ZN92 141 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 UPK3BQ9BT76 320 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 Q9H8V8 135 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 PYGO1Q9Y3Y4 419 aa9.61□□□□□ -0.87
LDLR-213ENST00000560502 KRTAP10-2P60368 255 aa9.6□□□□□ -0.87
LDLR-213ENST00000560502 TTC32Q5I0X7 151 aa9.6□□□□□ -0.87
LDLR-213ENST00000560502 VAMP8Q9BV40 100 aa9.6□□□□□ -0.87
LDLR-213ENST00000560502 SPANXA1Q9NS26 97 aa9.6□□□□□ -0.87
LDLR-213ENST00000560502 TRAV26-1A0A087WT03 109 aa9.59□□□□□ -0.87
LDLR-213ENST00000560502 IGIPA6NJ69 53 aa9.59□□□□□ -0.87
LDLR-213ENST00000560502 PRSS1P07477 247 aa9.59□□□□□ -0.87
LDLR-213ENST00000560502 SH2D6Q7Z4S9 175 aa9.59□□□□□ -0.87
LDLR-213ENST00000560502 TIMM21Q9BVV7 248 aa9.59□□□□□ -0.87
LDLR-213ENST00000560502 GAGE12JA6NER3 117 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 H3BNG1 76 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 H7C423 109 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 GAGE1Q13065 139 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 GAGE4Q13068 117 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 GAGE5Q13069 117 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 GAGE13Q4V321 117 aa9.58□□□□□ -0.88
LDLR-213ENST00000560502 MRPS16Q9Y3D3 137 aaKnown RBP9.58□□□□□ -0.88
LDLR-213ENST00000560502 TRAV9-2A0A087WT02 112 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 A0A087WX48 190 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 PAX4O43316 350 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 PLNP26678 52 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 ODF1Q14990 250 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 ESRGQ1W209 222 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 CHCHD7Q9BUK0 85 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 Q9UF83 564 aa9.57□□□□□ -0.88
LDLR-213ENST00000560502 A0A0J9YY99 117 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 HSBP1L1C9JCN9 74 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 TSTD3H0UI37 97 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 PKIAP61925 76 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 CDPF1Q6NVV7 123 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 BAALCQ8WXS3 180 aa9.56□□□□□ -0.88
LDLR-213ENST00000560502 CSDC2Q9Y534 153 aaKnown RBP9.56□□□□□ -0.88
LDLR-213ENST00000560502 HERC1Q15751 4861 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 TRBV25-1A0A075B6N4 114 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 F8VRH5 84 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 H0Y8G0 127 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 GYPEP15421 78 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 RPL39P62891 51 aaKnown RBP9.55□□□□□ -0.88
LDLR-213ENST00000560502 PMVKQ15126 192 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 Q6ZRN7 208 aaPredicted RBP9.55□□□□□ -0.88
LDLR-213ENST00000560502 MRPL52Q86TS9 123 aaKnown RBP9.55□□□□□ -0.88
LDLR-213ENST00000560502 TMEM243Q9BU79 118 aa9.55□□□□□ -0.88
LDLR-213ENST00000560502 DMBT1Q9UGM3 2413 aaPredicted RBP9.55□□□□□ -0.88
LDLR-213ENST00000560502 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
LDLR-213ENST00000560502 DPM2O94777 84 aa9.54□□□□□ -0.88
LDLR-213ENST00000560502 MRPS36P82909 103 aaKnown RBP9.54□□□□□ -0.88
LDLR-213ENST00000560502 ATP6V0E2Q8NHE4 81 aa9.54□□□□□ -0.88
LDLR-213ENST00000560502 UBE2D4Q9Y2X8 147 aa9.54□□□□□ -0.88
LDLR-213ENST00000560502 LOC100131303A0A0U1RQF7 123 aa9.53□□□□□ -0.88
LDLR-213ENST00000560502 IGKCP01834 107 aa9.53□□□□□ -0.88
LDLR-213ENST00000560502 ZNF25P17030 456 aaPredicted RBP9.53□□□□□ -0.88
LDLR-213ENST00000560502 MRPL23Q16540 153 aaKnown RBP9.53□□□□□ -0.88
LDLR-213ENST00000560502 VSIG2Q96IQ7 327 aa9.53□□□□□ -0.88
LDLR-213ENST00000560502 ICOSQ9Y6W8 199 aa9.53□□□□□ -0.88
LDLR-213ENST00000560502 IGLV4-3A0A075B6K6 122 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 A0A096LPF7 62 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 TRBV6-8A0A0A6YYG3 113 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 NTM-AS1Q6ZSK4 140 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 ZNF664Q8N3J9 261 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 PAM16Q9Y3D7 125 aa9.52□□□□□ -0.89
LDLR-213ENST00000560502 CHTOPQ9Y3Y2 248 aaKnown RBP9.52□□□□□ -0.89
LDLR-213ENST00000560502 UBE2L6O14933 153 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 SPATA45Q537H7 98 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 AMELXQ99217 191 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 VCX2Q9H322 139 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 CST9LQ9H4G1 147 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 FAT1Q14517 4588 aa9.51□□□□□ -0.89
LDLR-213ENST00000560502 TIRAPP58753 221 aa9.5□□□□□ -0.89
LDLR-213ENST00000560502 DGAT2L7PQ6IED9 249 aa9.5□□□□□ -0.89
LDLR-213ENST00000560502 ATOH7Q8N100 152 aa9.5□□□□□ -0.89
LDLR-213ENST00000560502 C2orf88Q9BSF0 95 aa9.5□□□□□ -0.89
LDLR-213ENST00000560502 MRPL35Q9NZE8 188 aaKnown RBP9.5□□□□□ -0.89
LDLR-213ENST00000560502 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.49□□□□□ -0.89
LDLR-213ENST00000560502 IGKV2-29A2NJV5 120 aaPredicted RBP9.49□□□□□ -0.89
LDLR-213ENST00000560502 FGF6P10767 208 aa9.49□□□□□ -0.89
LDLR-213ENST00000560502 DEFB104AQ8WTQ1 72 aa9.49□□□□□ -0.89
LDLR-213ENST00000560502 TMEM101Q96IK0 257 aa9.49□□□□□ -0.89
LDLR-213ENST00000560502 PMCHL2Q9BQD1 86 aa9.49□□□□□ -0.89
LDLR-213ENST00000560502 EPM2AB3EWF7 344 aa9.48□□□□□ -0.89
LDLR-213ENST00000560502 AMMECR1LQ6DCA0 310 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms