RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 LOC389332A0A1B0GUA5 103 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 IGHV3-30P01768 117 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 IGHV3-33P01772 117 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 IGHV3-30-3P0DP02 117 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 IGHV3-30-5P0DP03 117 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 SUMO2P61956 95 aaKnown RBP6.31□□□□□ -1.4
LDLR-211ENST00000560173 ORMDL2Q53FV1 153 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 PET117Q6UWS5 81 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 DAZ4Q86SG3 579 aaKnown RBP6.31□□□□□ -1.4
LDLR-211ENST00000560173 NFE4Q86UQ8 179 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 URB1-AS1Q96HZ7 61 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 KRTAP4-5Q9BYR2 181 aa6.31□□□□□ -1.4
LDLR-211ENST00000560173 DAZ3Q9NR90 486 aaKnown RBP6.31□□□□□ -1.4
LDLR-211ENST00000560173 TRBV6-8A0A0A6YYG3 113 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 TRAV26-2A0A0B4J265 109 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 IBA57-AS1B1ANH7 110 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 SMKR1H3BMG3 65 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 NCR2O95944 276 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 C3orf79P0CE67 100 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 FCER1GP30273 86 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 PKIAP61925 76 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 SPATA12Q7Z6I5 190 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 NRACQ8N912 160 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 SMIM2Q9BVW6 85 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 ST20Q9HBF5 79 aa6.3□□□□□ -1.4
LDLR-211ENST00000560173 TRBV6-5A0A0K0K1A5 114 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 ATP5LO75964 103 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 LAGE3Q14657 143 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 TMEM97Q5BJF2 176 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 TEX43Q6ZNM6 134 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 NTM-AS1Q6ZSK4 140 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 KIR2DL4Q99706 377 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 CHCHD7Q9BUK0 85 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 VAMP8Q9BV40 100 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 DNAH5Q8TE73 4624 aa6.29□□□□□ -1.4
LDLR-211ENST00000560173 LRP1BQ9NZR2 4599 aa6.28□□□□□ -1.4
LDLR-211ENST00000560173 SYS1-DBNDD2H3BUS1 97 aa6.28□□□□□ -1.4
LDLR-211ENST00000560173 VCYO14598 125 aa6.28□□□□□ -1.4
LDLR-211ENST00000560173 RPL39LQ96EH5 51 aaKnown RBP6.28□□□□□ -1.4
LDLR-211ENST00000560173 Q9HAA7 133 aa6.28□□□□□ -1.4
LDLR-211ENST00000560173 A0A087WX48 190 aa6.27□□□□□ -1.41
LDLR-211ENST00000560173 HSBP1L1C9JCN9 74 aa6.27□□□□□ -1.41
LDLR-211ENST00000560173 CHCHD5Q9BSY4 110 aa6.27□□□□□ -1.41
LDLR-211ENST00000560173 TRBV25-1A0A075B6N4 114 aa6.26□□□□□ -1.41
LDLR-211ENST00000560173 PCP4L1A6NKN8 68 aa6.26□□□□□ -1.41
LDLR-211ENST00000560173 GAS8-AS1O95177 125 aa6.26□□□□□ -1.41
LDLR-211ENST00000560173 MPV17L2Q567V2 206 aa6.26□□□□□ -1.41
LDLR-211ENST00000560173 IFI27L1Q96BM0 104 aa6.26□□□□□ -1.41
LDLR-211ENST00000560173 A0A087WTM6 91 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 TRAV8-3A0A0A6YYJ7 113 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 TRBV27A0A0K0K1C4 114 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 TMEM262E9PQX1 116 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 POLR2KP53803 58 aaKnown RBP6.25□□□□□ -1.41
LDLR-211ENST00000560173 GAGE6Q13070 117 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 COTL1Q14019 142 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 LINC01545Q5VT33 79 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 TMEM243Q9BU79 118 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 KLK12Q9UKR0 248 aa6.25□□□□□ -1.41
LDLR-211ENST00000560173 A0A096LNJ9 63 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 LRCOL1A6NCL2 159 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 SDHAF1A6NFY7 115 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.24□□□□□ -1.41
LDLR-211ENST00000560173 PSCAO43653 123 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 KRTAP10-2P60368 255 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 RBX1P62877 108 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 Q8N976 141 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 DEFB104AQ8WTQ1 72 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 TOMM6Q96B49 74 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 TM2D2Q9BX73 214 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 CYSLTR1Q9Y271 337 aa6.24□□□□□ -1.41
LDLR-211ENST00000560173 C16orf90A8MZG2 172 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 I3L3M4 83 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 EREGO14944 169 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 PAPPA-AS1Q5QFB9 102 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 Q6ZN92 141 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 ZNF664Q8N3J9 261 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 UBE2WQ96B02 151 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 RMI2Q96E14 147 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 HERC1Q15751 4861 aa6.23□□□□□ -1.41
LDLR-211ENST00000560173 ANGP03950 147 aaKnown RBP6.22□□□□□ -1.41
LDLR-211ENST00000560173 PRSS1P07477 247 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 NPSP0C0P6 89 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 DDTP30046 118 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 SMAGPQ0VAQ4 97 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 SPATA45Q537H7 98 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 CDPF1Q6NVV7 123 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 ENHOQ6UWT2 76 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 ERASQ7Z444 233 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 TMEM141Q96I45 108 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 SCGB3A1Q96QR1 104 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 PAM16Q9Y3D7 125 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 HSPG2P98160 4391 aa6.22□□□□□ -1.41
LDLR-211ENST00000560173 APOBP04114 4563 aaKnown RBP6.21□□□□□ -1.42
LDLR-211ENST00000560173 IGKV2D-24A0A075B6R9 120 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 TRAV12-1A0A0B4J245 112 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 A0A1B0GUV1 79 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 UBE2L6O14933 153 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 TSHBP01222 138 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 CRPP02741 224 aa6.21□□□□□ -1.42
LDLR-211ENST00000560173 WFDC2Q14508 124 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms