RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C18orf32Q8TCD1 76 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 AP5S1Q9NUS5 200 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 UBE2D4Q9Y2X8 147 aa6.77□□□□□ -1.33
USP3-216ENST00000559873 DNAH2Q9P225 4427 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 IGLV4-60A0A075B6I1 120 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 PRSS29PA6NIE9 313 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 TRGC2P03986 189 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 NPSP0C0P6 89 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 C2orf66Q6UXQ4 117 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 Q6ZN92 141 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 ZNF664Q8N3J9 261 aa6.76□□□□□ -1.33
USP3-216ENST00000559873 IGKV3OR2-268A0A0C4DH90 116 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 LINC01546A6NGU7 62 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 RPL39P62891 51 aaKnown RBP6.75□□□□□ -1.33
USP3-216ENST00000559873 MRPS36P82909 103 aaKnown RBP6.75□□□□□ -1.33
USP3-216ENST00000559873 PAPPA-AS1Q5QFB9 102 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 ENHOQ6UWT2 76 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 Q6ZRN7 208 aaPredicted RBP6.75□□□□□ -1.33
USP3-216ENST00000559873 CDC42SE2Q9NRR3 84 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 PYGO1Q9Y3Y4 419 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 DNAH10Q8IVF4 4471 aa6.75□□□□□ -1.33
USP3-216ENST00000559873 CCL25O15444 150 aa6.74□□□□□ -1.33
USP3-216ENST00000559873 LINC00614P0C842 121 aa6.74□□□□□ -1.33
USP3-216ENST00000559873 SS18Q15532 418 aa6.74□□□□□ -1.33
USP3-216ENST00000559873 BAGE3Q86Y29 109 aa6.74□□□□□ -1.33
USP3-216ENST00000559873 CHCHD1Q96BP2 118 aaKnown RBP6.74□□□□□ -1.33
USP3-216ENST00000559873 C2orf88Q9BSF0 95 aa6.74□□□□□ -1.33
USP3-216ENST00000559873 HBDP02042 147 aa6.73□□□□□ -1.33
USP3-216ENST00000559873 Q6ZUT4 128 aa6.73□□□□□ -1.33
USP3-216ENST00000559873 TOMM6Q96B49 74 aa6.73□□□□□ -1.33
USP3-216ENST00000559873 TMEM141Q96I45 108 aa6.73□□□□□ -1.33
USP3-216ENST00000559873 TIMM17AQ99595 171 aa6.73□□□□□ -1.33
USP3-216ENST00000559873 IGLV10-54A0A075B6I4 117 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 IFITM10A6NMD0 228 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 HSBP1O75506 76 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 TNP2Q05952 138 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 C14orf177Q52M58 125 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 TEX43Q6ZNM6 134 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 FRAS1Q86XX4 4008 aa6.72□□□□□ -1.33
USP3-216ENST00000559873 DNAH17Q9UFH2 4485 aa6.71□□□□□ -1.33
USP3-216ENST00000559873 IGLV4-3A0A075B6K6 122 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 A0A087WTM6 91 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 LINC00959A0A1B0GUT2 108 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 C1orf196B1AJZ1 125 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 ERASQ7Z444 233 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 CHCHD10Q8WYQ3 142 aaPredicted RBP6.71□□□□□ -1.34
USP3-216ENST00000559873 SCGB3A1Q96QR1 104 aa6.71□□□□□ -1.34
USP3-216ENST00000559873 FAT2Q9NYQ8 4349 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 TRAV13-1A0A0B4J241 112 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 GAGE12HA6NDE8 117 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 IGIPA6NJ69 53 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.7□□□□□ -1.34
USP3-216ENST00000559873 XCL1P47992 114 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 RNASE13Q5GAN3 156 aaKnown RBP6.7□□□□□ -1.34
USP3-216ENST00000559873 VCX2Q9H322 139 aa6.7□□□□□ -1.34
USP3-216ENST00000559873 ATP5LO75964 103 aa6.69□□□□□ -1.34
USP3-216ENST00000559873 CFAP161Q6P656 301 aa6.69□□□□□ -1.34
USP3-216ENST00000559873 CD164L2Q6UWJ8 174 aa6.69□□□□□ -1.34
USP3-216ENST00000559873 URB1-AS1Q96HZ7 61 aa6.69□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BKO60814 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BJP06899 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BOP23527 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BBP33778 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BDP58876 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BCP62807 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 SEC11AP67812 179 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST2H2BEQ16778 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.68□□□□□ -1.34
USP3-216ENST00000559873 CDPF1Q6NVV7 123 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 NTN5Q8WTR8 489 aaPredicted RBP6.68□□□□□ -1.34
USP3-216ENST00000559873 BAALCQ8WXS3 180 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BHQ93079 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BNQ99877 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 HIST1H2BMQ99879 126 aa6.68□□□□□ -1.34
USP3-216ENST00000559873 OPRPNQ99935 248 aaPredicted RBP6.68□□□□□ -1.34
USP3-216ENST00000559873 HECTD4Q9Y4D8 3996 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 LRCOL1A6NCL2 159 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 USP17L23D6RBM5 183 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 SERF1AO75920 110 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 MALP21145 153 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 PMCHL1Q16048 86 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 Q8N814 137 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 AMELXQ99217 191 aa6.67□□□□□ -1.34
USP3-216ENST00000559873 A0A096LNJ9 63 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 A0A1B0GVY2 172 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 COX7A2LO14548 114 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 LECT2O14960 151 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 APOMO95445 188 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 FOXI1Q12951 378 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 PMVKQ15126 192 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 PDZD11Q5EBL8 140 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 KRTAP26-1Q6PEX3 210 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 MAPKAPK5-AS1Q8N8E1 139 aa6.66□□□□□ -1.34
USP3-216ENST00000559873 IGHV1-58A0A0C4DH39 117 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 LEPROTL1O95214 131 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 UBE2D1P51668 147 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 HERVK_113P63121 156 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 LINC00173Q6ZV60 143 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 SPATA12Q7Z6I5 190 aa6.65□□□□□ -1.34
USP3-216ENST00000559873 FAM104AQ969W3 186 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms