RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 A2ML1A8K2U0 1454 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 NALCNQ8IZF0 1738 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 LRP6O75581 1613 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 KTN1Q86UP2 1357 aaKnown RBP0.1□□□□□ -2.39
SCFD1-213ENST00000554776 ITPR1Q14643 2758 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 A0A0D9SFI3 127 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 DLEU1O43261 78 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 CFDP00746 253 aaPredicted RBP0.1□□□□□ -2.39
SCFD1-213ENST00000554776 KRTAP20-1Q3LI63 56 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 TMEM170BQ5T4T1 132 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 C5orf38Q86SI9 138 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 C8orf59Q8N0T1 100 aaPredicted RBP0.1□□□□□ -2.39
SCFD1-213ENST00000554776 SMIM4Q8WVI0 70 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 AMELXQ99217 191 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 MGST2Q99735 147 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 DYNLRB1Q9NP97 96 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 U3KQA8 63 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 SSPOA2VEC9 5147 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 CHD8Q9HCK8 2581 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 MUC2Q02817 5179 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 MAP1BP46821 2468 aaKnown RBP0.1□□□□□ -2.39
SCFD1-213ENST00000554776 DOPEY1Q5JWR5 2465 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 PCLOQ9Y6V0 5065 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 SETXQ7Z333 2677 aaKnown RBP0.1□□□□□ -2.39
SCFD1-213ENST00000554776 BCL9LQ86UU0 1499 aa0.1□□□□□ -2.39
SCFD1-213ENST00000554776 HIVEP3Q5T1R4 2406 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 ABCA2Q9BZC7 2435 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 KIAA1109Q2LD37 5005 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 KDM3BQ7LBC6 1761 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 KIF21AQ7Z4S6 1674 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 ITPR3Q14573 2671 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 PDZD2O15018 2839 aa0.09□□□□□ -2.39
SCFD1-213ENST00000554776 TRAV22A0A0B4J277 110 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 IGLC7A0M8Q6 106 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 EFCAB10A6NFE3 127 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 F8VRH5 84 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 HMGN4O00479 90 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 COMMD6Q7Z4G1 85 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 CNFNQ9BYD5 112 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 CYP4F30PQ9H0H9 118 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 CFAP46Q8IYW2 2715 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 DSPP15924 2871 aaKnown RBP0.09□□□□□ -2.4
SCFD1-213ENST00000554776 LAMC1P11047 1609 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 NBEAL1Q6ZS30 2694 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 MXRA5Q9NR99 2828 aa0.09□□□□□ -2.4
SCFD1-213ENST00000554776 SETD2Q9BYW2 2564 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-213ENST00000554776 DMBT1Q9UGM3 2413 aaPredicted RBP0.08□□□□□ -2.4
SCFD1-213ENST00000554776 TENM4Q6N022 2769 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 ZANQ9Y493 2812 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 ERCC6L2Q5T890 1561 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 FASNP49327 2511 aaKnown RBP0.08□□□□□ -2.4
SCFD1-213ENST00000554776 TPPP2P59282 170 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 BAGE2Q86Y30 109 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 CHD6Q8TD26 2715 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 MYO18BQ8IUG5 2567 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 CSMD3Q7Z407 3707 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 TRANK1O15050 2925 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 SHROOM2Q13796 1616 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 BIVM-ERCC5R4GMW8 1640 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 PLCE1Q9P212 2302 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 NIPBLQ6KC79 2804 aaeCLIP0.08□□□□□ -2.4
SCFD1-213ENST00000554776 GCN1Q92616 2671 aaKnown RBP0.08□□□□□ -2.4
SCFD1-213ENST00000554776 MYO9AB2RTY4 2548 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 WDR87Q6ZQQ6 2873 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 C2CD3Q4AC94 2353 aa0.08□□□□□ -2.4
SCFD1-213ENST00000554776 BSNQ9UPA5 3926 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 USP9YO00507 2555 aaPredicted RBP0.07□□□□□ -2.4
SCFD1-213ENST00000554776 NBEAL2Q6ZNJ1 2754 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 ATRQ13535 2644 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 ACACBO00763 2458 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 PTPN13Q12923 2485 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 NEBP20929 6669 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 M0R3E3 92 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 SSSCA1O60232 199 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 Q6JHZ5 121 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 LINC00472Q9H8W2 130 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 COL7A1Q02388 2944 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 EPG5Q9HCE0 2579 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 TENM2Q9NT68 2774 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 WNK2Q9Y3S1 2297 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 LRRC37A2A6NM11 1700 aa0.07□□□□□ -2.4
SCFD1-213ENST00000554776 RYR2Q92736 4967 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 ACANP16112 2415 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 HERC1Q15751 4861 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 CELSR3Q9NYQ7 3312 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 RIMS1Q86UR5 1692 aaKnown RBP0.06□□□□□ -2.4
SCFD1-213ENST00000554776 MGAM2Q2M2H8 2515 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 MYOM2P54296 1465 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 PTPRQQ9UMZ3 2332 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 LINC00587B1AMM8 73 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 CHKB-CPT1BH3BT56 60 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 UQCR11O14957 56 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 TNFP01375 233 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 S100A1P23297 94 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 COX17Q14061 63 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 MYOZ3Q8TDC0 251 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 SPRR2GQ9BYE4 73 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 SBF2Q86WG5 1849 aa0.06□□□□□ -2.4
SCFD1-213ENST00000554776 UTP20O75691 2785 aaKnown RBP0.06□□□□□ -2.4
SCFD1-213ENST00000554776 RYR1P21817 5038 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms