RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 SCO2A0A1W2PP80 73 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 C19orf71A6NCJ1 209 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 H7C423 109 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 ZNF861PO60384 105 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 ZNF25P17030 456 aaPredicted RBP8.33□□□□□ -1.08
VPS29-209ENST00000551655 LINC00173Q6ZV60 143 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 OR2D3Q8NGH3 330 aa8.33□□□□□ -1.08
VPS29-209ENST00000551655 NCR2O95944 276 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 SPAG11BQ08648 103 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 RNF151Q2KHN1 245 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 GAGE2EQ4V326 116 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 KRTAP13-2Q52LG2 175 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 C10orf25Q5T742 122 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 C5orf38Q86SI9 138 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 GAGE2DQ9UEU5 116 aa8.32□□□□□ -1.08
VPS29-209ENST00000551655 MAP1LC3B2A6NCE7 125 aa8.31□□□□□ -1.08
VPS29-209ENST00000551655 ESDP10768 282 aa8.31□□□□□ -1.08
VPS29-209ENST00000551655 MAP1LC3BQ9GZQ8 125 aa8.31□□□□□ -1.08
VPS29-209ENST00000551655 PPDPFQ9H3Y8 114 aa8.31□□□□□ -1.08
VPS29-209ENST00000551655 CDC42SE2Q9NRR3 84 aa8.31□□□□□ -1.08
VPS29-209ENST00000551655 SSNA1O43805 119 aa8.3□□□□□ -1.08
VPS29-209ENST00000551655 PAGE4O60829 102 aa8.3□□□□□ -1.08
VPS29-209ENST00000551655 TRGC1P0CF51 173 aa8.3□□□□□ -1.08
VPS29-209ENST00000551655 RNASE13Q5GAN3 156 aaKnown RBP8.3□□□□□ -1.08
VPS29-209ENST00000551655 MZT2BQ6NZ67 158 aa8.3□□□□□ -1.08
VPS29-209ENST00000551655 CCDC32Q9BV29 185 aa8.3□□□□□ -1.08
VPS29-209ENST00000551655 KRTAP4-8A0A0G2JLE6 195 aa8.29□□□□□ -1.08
VPS29-209ENST00000551655 FHITP49789 147 aa8.29□□□□□ -1.08
VPS29-209ENST00000551655 RPL7L1Q6DKI1 246 aaKnown RBP8.29□□□□□ -1.08
VPS29-209ENST00000551655 LYZL1Q6UWQ5 148 aa8.29□□□□□ -1.08
VPS29-209ENST00000551655 ENKURQ8TC29 256 aa8.29□□□□□ -1.08
VPS29-209ENST00000551655 TCEAL7Q9BRU2 100 aa8.29□□□□□ -1.08
VPS29-209ENST00000551655 SDHAF1A6NFY7 115 aa8.28□□□□□ -1.08
VPS29-209ENST00000551655 ASB16-AS1Q495Z4 193 aa8.28□□□□□ -1.08
VPS29-209ENST00000551655 LINC00304Q8N9R0 145 aa8.28□□□□□ -1.08
VPS29-209ENST00000551655 MRPL35Q9NZE8 188 aaKnown RBP8.28□□□□□ -1.08
VPS29-209ENST00000551655 G3V3Q6 166 aa8.27□□□□□ -1.09
VPS29-209ENST00000551655 IMMP2LQ96T52 175 aa8.27□□□□□ -1.09
VPS29-209ENST00000551655 TMEM242Q9NWH2 141 aa8.27□□□□□ -1.09
VPS29-209ENST00000551655 C6orf48Q9UBA6 75 aa8.27□□□□□ -1.09
VPS29-209ENST00000551655 TSHBP01222 138 aa8.26□□□□□ -1.09
VPS29-209ENST00000551655 S100A9P06702 114 aaKnown RBP8.26□□□□□ -1.09
VPS29-209ENST00000551655 FOXA3P55318 350 aaPredicted RBP8.26□□□□□ -1.09
VPS29-209ENST00000551655 MT1HP80294 61 aa8.26□□□□□ -1.09
VPS29-209ENST00000551655 UNQ6190/PRO20217Q6UXQ8 127 aa8.26□□□□□ -1.09
VPS29-209ENST00000551655 SMDT1Q9H4I9 107 aa8.26□□□□□ -1.09
VPS29-209ENST00000551655 TRAV13-1A0A0B4J241 112 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 C1orf196B1AJZ1 125 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 PMCHP20382 165 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 AKR1C8PQ5T2L2 129 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 CTDSP1Q9GZU7 261 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 ALG5Q9Y673 324 aa8.25□□□□□ -1.09
VPS29-209ENST00000551655 A0A1B0GV50 99 aa8.24□□□□□ -1.09
VPS29-209ENST00000551655 I3L3M4 83 aa8.24□□□□□ -1.09
VPS29-209ENST00000551655 TLX1NBP0CAT3 122 aa8.24□□□□□ -1.09
VPS29-209ENST00000551655 C9orf129Q5T035 196 aaKnown RBP8.24□□□□□ -1.09
VPS29-209ENST00000551655 MRPL52Q86TS9 123 aaKnown RBP8.24□□□□□ -1.09
VPS29-209ENST00000551655 ORAOV1Q8WV07 137 aa8.24□□□□□ -1.09
VPS29-209ENST00000551655 MRAP2Q96G30 205 aa8.24□□□□□ -1.09
VPS29-209ENST00000551655 RNASE7Q9H1E1 156 aaKnown RBP8.24□□□□□ -1.09
VPS29-209ENST00000551655 F2Z2F3 143 aa8.23□□□□□ -1.09
VPS29-209ENST00000551655 RPS20P60866 119 aaKnown RBP8.23□□□□□ -1.09
VPS29-209ENST00000551655 TWIST1Q15672 202 aa8.23□□□□□ -1.09
VPS29-209ENST00000551655 TMUB2Q71RG4 321 aa8.23□□□□□ -1.09
VPS29-209ENST00000551655 NDUFA1O15239 70 aa8.22□□□□□ -1.09
VPS29-209ENST00000551655 GHRHP01286 108 aa8.22□□□□□ -1.09
VPS29-209ENST00000551655 RPL35P42766 123 aaKnown RBP8.22□□□□□ -1.09
VPS29-209ENST00000551655 OR10D4PQ8NGN7 298 aa8.22□□□□□ -1.09
VPS29-209ENST00000551655 IFNA1P01562 189 aa8.21□□□□□ -1.1
VPS29-209ENST00000551655 KRTAP19-2Q3LHN2 52 aa8.21□□□□□ -1.1
VPS29-209ENST00000551655 Q5BKY6 102 aa8.21□□□□□ -1.1
VPS29-209ENST00000551655 LINC00242Q5T6M2 205 aa8.21□□□□□ -1.1
VPS29-209ENST00000551655 KRTAP19-1Q8IUB9 90 aa8.21□□□□□ -1.1
VPS29-209ENST00000551655 CTRLP40313 264 aa8.2□□□□□ -1.1
VPS29-209ENST00000551655 KRTAP13-3Q3SY46 172 aa8.2□□□□□ -1.1
VPS29-209ENST00000551655 CENPWQ5EE01 88 aa8.2□□□□□ -1.1
VPS29-209ENST00000551655 LINC00337Q8N6G1 96 aa8.2□□□□□ -1.1
VPS29-209ENST00000551655 NUPR1O60356 82 aa8.19□□□□□ -1.1
VPS29-209ENST00000551655 PFDN1O60925 122 aa8.19□□□□□ -1.1
VPS29-209ENST00000551655 KRTAP10-6P60371 365 aaPredicted RBP8.19□□□□□ -1.1
VPS29-209ENST00000551655 Q6ZUT4 128 aa8.19□□□□□ -1.1
VPS29-209ENST00000551655 MARVELD1Q9BSK0 173 aa8.19□□□□□ -1.1
VPS29-209ENST00000551655 BORCS7-ASMTA0A0B4J1R7 106 aa8.18□□□□□ -1.1
VPS29-209ENST00000551655 C7orf77A4D0Y5 90 aa8.18□□□□□ -1.1
VPS29-209ENST00000551655 RPL28P46779 137 aaKnown RBP8.18□□□□□ -1.1
VPS29-209ENST00000551655 IFITM3Q01628 133 aa8.18□□□□□ -1.1
VPS29-209ENST00000551655 C9orf62Q8N4C0 152 aa8.18□□□□□ -1.1
VPS29-209ENST00000551655 CFC1BP0CG36 223 aa8.17□□□□□ -1.1
VPS29-209ENST00000551655 TMEM241Q24JQ0 296 aa8.17□□□□□ -1.1
VPS29-209ENST00000551655 UBE2D4Q9Y2X8 147 aa8.17□□□□□ -1.1
VPS29-209ENST00000551655 C22orf24Q9Y442 160 aa8.17□□□□□ -1.1
VPS29-209ENST00000551655 TRBV6-5A0A0K0K1A5 114 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 XKRY2A2RUG3 117 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 RAB19A4D1S5 217 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 H2AFB1P0C5Y9 115 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 SEC61BP60468 96 aaKnown RBP8.16□□□□□ -1.1
VPS29-209ENST00000551655 CNFNQ9BYD5 112 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 SSPOA2VEC9 5147 aa8.16□□□□□ -1.1
VPS29-209ENST00000551655 BCE1O60756 84 aa8.15□□□□□ -1.1
VPS29-209ENST00000551655 C2orf82Q6UX34 121 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms