RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 VAMP8Q9BV40 100 aa5.02□□□□□ -1.61
DEPDC4-208ENST00000549341 TRBV6-4A0A1B0GX49 114 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 GAS8-AS1O95177 125 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 PRM2P04554 102 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 SPART-AS1P0CW21 52 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 COTL1Q14019 142 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 UFSP1Q6NVU6 142 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 SPATA12Q7Z6I5 190 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 DAZ4Q86SG3 579 aaKnown RBP5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 TOMM6Q96B49 74 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 TMEM141Q96I45 108 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 DAZ3Q9NR90 486 aaKnown RBP5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 APLNQ9ULZ1 77 aa5.01□□□□□ -1.61
DEPDC4-208ENST00000549341 TRBV7-3A0A075B6L6 115 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 H0Y8G0 127 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 DEFB130BP0DP73 79 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 DEFB130AP0DP74 79 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 TCTAP57738 103 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 DAD1P61803 113 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 PKIAP61925 76 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 C2orf66Q6UXQ4 117 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 ERASQ7Z444 233 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 ZNF479Q96JC4 524 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 X6R8D5 127 aa5□□□□□ -1.61
DEPDC4-208ENST00000549341 IGHV4-28A0A0C4DH34 117 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 PLAC8L1A1L4L8 177 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 CDK2AP2O75956 126 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 NPSP0C0P6 89 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 LINC01545Q5VT33 79 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 TEX43Q6ZNM6 134 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 Q8N1X5 172 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 LINC00612Q8N6U2 182 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 NEXN-AS1Q8NBZ9 246 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 ZNRF2Q8NHG8 242 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 TIMM17AQ99595 171 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 KRTAP3-1Q9BYR8 98 aa4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 C11orf68Q9H3H3 251 aaKnown RBP4.99□□□□□ -1.61
DEPDC4-208ENST00000549341 TRAV9-2A0A087WT02 112 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 A0A096LNJ9 63 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 TRAV12-1A0A0B4J245 112 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 SLPIP03973 132 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 ATP5G1P05496 136 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 FAM222AQ5U5X8 452 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 NEGR1Q7Z3B1 354 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 SH2D6Q7Z4S9 175 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 DKK2Q9UBU2 259 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 PRO0255Q9UI72 69 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 HHLA3Q9XRX5 114 aa4.98□□□□□ -1.61
DEPDC4-208ENST00000549341 A0A087WX48 190 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GAGE12JA6NER3 117 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 PCP4L1A6NKN8 68 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 UBE2L6O14933 153 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 DPM2O94777 84 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 TSHBP01222 138 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 IGKCP01834 107 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 P0DMU3 169 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 FAM231AP0DMU4 169 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 FAM231CP0DMU5 169 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 PLNP26678 52 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 CRYBA4P53673 196 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GAGE1Q13065 139 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GAGE4Q13068 117 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GAGE5Q13069 117 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 FHL2Q14192 279 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GAGE13Q4V321 117 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 SPATA45Q537H7 98 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 DGAT2L7PQ6IED9 249 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 Q6ZTC4 211 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 LINC00173Q6ZV60 143 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 UBE2DNLQ8IWF7 75 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 SLC25A29Q8N8R3 303 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 Q8NAQ8 132 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 C20orf203Q8NBC4 194 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 GTSF1LQ9H1H1 148 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 SPANXA1Q9NS26 97 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 PAM16Q9Y3D7 125 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 PYGO1Q9Y3Y4 419 aa4.97□□□□□ -1.61
DEPDC4-208ENST00000549341 TRBV25-1A0A075B6N4 114 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 TRAV10A0A0B4J240 114 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 F8VRH5 84 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 H7C423 109 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 UBE2D3P61077 147 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 HERVK_113P61574 105 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 UBE2D2P62837 147 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 PMVKQ15126 192 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 Q6ZSN1 163 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 Q8N976 141 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 TMEM101Q96IK0 257 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 PMCHL2Q9BQD1 86 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 C2orf88Q9BSF0 95 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 VCX2Q9H322 139 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 CHTOPQ9Y3Y2 248 aaKnown RBP4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 HMCN2Q8NDA2 5059 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 FAT1Q14517 4588 aa4.96□□□□□ -1.62
DEPDC4-208ENST00000549341 PLA2G1BP04054 148 aaKnown RBP4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 AMMECR1LQ6DCA0 310 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 ATOH7Q8N100 152 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 ZNF664Q8N3J9 261 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 ATP6V0E2Q8NHE4 81 aa4.95□□□□□ -1.62
DEPDC4-208ENST00000549341 BAALCQ8WXS3 180 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms