RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 PANO1I0J062 215 aa11.93□□□□□ -0.5
CHMP1A-207ENST00000549328 VCYO14598 125 aa11.93□□□□□ -0.5
CHMP1A-207ENST00000549328 SRSF3P84103 164 aaKnown RBP11.92□□□□□ -0.5
CHMP1A-207ENST00000549328 LINC00959A0A1B0GUT2 108 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 A0A1B0GW15 77 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 C7orf77A4D0Y5 90 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 RPL37AP61513 92 aaKnown RBP11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 SUMO2P61956 95 aaKnown RBP11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 FOXI1Q12951 378 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 FAM104BQ5XKR9 115 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 NRACQ8N912 160 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 CDC42SE2Q9NRR3 84 aa11.91□□□□□ -0.5
CHMP1A-207ENST00000549328 GVQW2A0A096LPI5 108 aaPredicted RBP11.9□□□□□ -0.5
CHMP1A-207ENST00000549328 SMKR1H3BMG3 65 aa11.9□□□□□ -0.5
CHMP1A-207ENST00000549328 PPP1R2P9O14990 202 aa11.9□□□□□ -0.5
CHMP1A-207ENST00000549328 LINC00862A6NCI5 91 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 FCER1GP30273 86 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 HIGD2BQ4VC39 106 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 ZNF664Q8N3J9 261 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 DPH3Q96FX2 82 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 KIR2DL4Q99706 377 aa11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 CSDC2Q9Y534 153 aaKnown RBP11.89□□□□□ -0.51
CHMP1A-207ENST00000549328 CCL25O15444 150 aa11.88□□□□□ -0.51
CHMP1A-207ENST00000549328 XCL1P47992 114 aa11.88□□□□□ -0.51
CHMP1A-207ENST00000549328 SMAGPQ0VAQ4 97 aa11.88□□□□□ -0.51
CHMP1A-207ENST00000549328 SS18Q15532 418 aa11.88□□□□□ -0.51
CHMP1A-207ENST00000549328 MRPL51Q4U2R6 128 aaKnown RBP11.88□□□□□ -0.51
CHMP1A-207ENST00000549328 TRBV24-1A0A075B6N3 115 aa11.87□□□□□ -0.51
CHMP1A-207ENST00000549328 OXTP01178 125 aa11.87□□□□□ -0.51
CHMP1A-207ENST00000549328 CAMPP49913 170 aa11.87□□□□□ -0.51
CHMP1A-207ENST00000549328 SPACA4Q8TDM5 124 aa11.87□□□□□ -0.51
CHMP1A-207ENST00000549328 C20orf78Q9BR46 151 aa11.87□□□□□ -0.51
CHMP1A-207ENST00000549328 A0A087WYN8 130 aa11.86□□□□□ -0.51
CHMP1A-207ENST00000549328 S100A8P05109 93 aa11.86□□□□□ -0.51
CHMP1A-207ENST00000549328 CD164L2Q6UWJ8 174 aa11.86□□□□□ -0.51
CHMP1A-207ENST00000549328 IGHV1-58A0A0C4DH39 117 aa11.85□□□□□ -0.51
CHMP1A-207ENST00000549328 CHTF8P0CG12 524 aa11.85□□□□□ -0.51
CHMP1A-207ENST00000549328 CKS2P33552 79 aa11.85□□□□□ -0.51
CHMP1A-207ENST00000549328 RPL32P62910 135 aaKnown RBP11.85□□□□□ -0.51
CHMP1A-207ENST00000549328 COX6A2Q02221 97 aa11.85□□□□□ -0.51
CHMP1A-207ENST00000549328 C1orf196B1AJZ1 125 aa11.84□□□□□ -0.51
CHMP1A-207ENST00000549328 TCAPO15273 167 aa11.84□□□□□ -0.51
CHMP1A-207ENST00000549328 TMEM18Q96B42 140 aa11.84□□□□□ -0.51
CHMP1A-207ENST00000549328 PLAC8Q9NZF1 115 aa11.84□□□□□ -0.51
CHMP1A-207ENST00000549328 UBE2D4Q9Y2X8 147 aa11.84□□□□□ -0.51
CHMP1A-207ENST00000549328 F8W036 122 aa11.83□□□□□ -0.52
CHMP1A-207ENST00000549328 HBBP68871 147 aa11.83□□□□□ -0.52
CHMP1A-207ENST00000549328 PRSS3P2Q8NHM4 247 aa11.83□□□□□ -0.52
CHMP1A-207ENST00000549328 TIMM21Q9BVV7 248 aa11.83□□□□□ -0.52
CHMP1A-207ENST00000549328 A0A1B0GXF2 115 aa11.82□□□□□ -0.52
CHMP1A-207ENST00000549328 PKIGQ9Y2B9 76 aa11.82□□□□□ -0.52
CHMP1A-207ENST00000549328 TNFRSF6BO95407 300 aa11.81□□□□□ -0.52
CHMP1A-207ENST00000549328 MRPL54Q6P161 138 aaKnown RBP11.81□□□□□ -0.52
CHMP1A-207ENST00000549328 PHOX2AO14813 284 aa11.8□□□□□ -0.52
CHMP1A-207ENST00000549328 PPBPP02775 128 aa11.8□□□□□ -0.52
CHMP1A-207ENST00000549328 HNRNPA3P51991 378 aaKnown RBP11.8□□□□□ -0.52
CHMP1A-207ENST00000549328 D6R8Y8 96 aa11.79□□□□□ -0.52
CHMP1A-207ENST00000549328 ZNF561-AS1K7EIQ3 104 aa11.79□□□□□ -0.52
CHMP1A-207ENST00000549328 ATP5L2Q7Z4Y8 100 aa11.79□□□□□ -0.52
CHMP1A-207ENST00000549328 SMIM2Q9BVW6 85 aa11.79□□□□□ -0.52
CHMP1A-207ENST00000549328 LINC00474Q9P2X8 69 aa11.79□□□□□ -0.52
CHMP1A-207ENST00000549328 LRP1Q07954 4544 aaKnown RBP11.78□□□□□ -0.52
CHMP1A-207ENST00000549328 IGKV2-24A0A0C4DH68 120 aa11.78□□□□□ -0.52
CHMP1A-207ENST00000549328 COX7A2LO14548 114 aa11.78□□□□□ -0.52
CHMP1A-207ENST00000549328 MAJINQ3KP22 176 aa11.78□□□□□ -0.52
CHMP1A-207ENST00000549328 CARD19Q96LW7 228 aa11.78□□□□□ -0.52
CHMP1A-207ENST00000549328 MALP21145 153 aa11.77□□□□□ -0.53
CHMP1A-207ENST00000549328 SYCNQ0VAF6 134 aa11.77□□□□□ -0.53
CHMP1A-207ENST00000549328 C7orf33Q8WU49 177 aa11.77□□□□□ -0.53
CHMP1A-207ENST00000549328 LINC00526Q96FQ7 95 aa11.77□□□□□ -0.53
CHMP1A-207ENST00000549328 A0A096LNI7 61 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 TRAV13-1A0A0B4J241 112 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 NPYP01303 97 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 RAB14P61106 215 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 PNRC1Q12796 327 aaPredicted RBP11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 RNASE13Q5GAN3 156 aaKnown RBP11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 Q6ZUT4 128 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 STPG4Q8N801 248 aa11.76□□□□□ -0.53
CHMP1A-207ENST00000549328 RPL39P62891 51 aaKnown RBP11.75□□□□□ -0.53
CHMP1A-207ENST00000549328 Q6ZRU5 148 aa11.75□□□□□ -0.53
CHMP1A-207ENST00000549328 ORMDL3Q8N138 153 aa11.75□□□□□ -0.53
CHMP1A-207ENST00000549328 SPANXA1Q9NS26 97 aa11.75□□□□□ -0.53
CHMP1A-207ENST00000549328 TMEM136Q6ZRR5 245 aa11.74□□□□□ -0.53
CHMP1A-207ENST00000549328 IGLV4-69A0A075B6H9 119 aa11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 MT-ND4LP03901 98 aa11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 MRPS36P82909 103 aaKnown RBP11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 SERTAD4-AS1Q5TG53 156 aa11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 FAM104AQ969W3 186 aa11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 ANAPC16Q96DE5 110 aa11.73□□□□□ -0.53
CHMP1A-207ENST00000549328 APOMO95445 188 aa11.72□□□□□ -0.53
CHMP1A-207ENST00000549328 C2orf48Q96LS8 159 aa11.72□□□□□ -0.53
CHMP1A-207ENST00000549328 PRELID3AQ96N28 172 aa11.72□□□□□ -0.53
CHMP1A-207ENST00000549328 PRSS47A8MTI9 375 aa11.71□□□□□ -0.53
CHMP1A-207ENST00000549328 RAB5AP20339 215 aa11.71□□□□□ -0.53
CHMP1A-207ENST00000549328 C5orf38Q86SI9 138 aa11.71□□□□□ -0.53
CHMP1A-207ENST00000549328 LAMTOR2Q9Y2Q5 125 aa11.71□□□□□ -0.53
CHMP1A-207ENST00000549328 FAT3Q8TDW7 4589 aa11.69□□□□□ -0.54
CHMP1A-207ENST00000549328 LOC107984640A0A0U1RRK4 108 aa11.69□□□□□ -0.54
CHMP1A-207ENST00000549328 CAMK2N2Q96S95 79 aa11.69□□□□□ -0.54
CHMP1A-207ENST00000549328 IGHV3OR16-9A0A0B4J2B5 98 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms