RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 RRN3P1Q2M238 152 aa11.77□□□□□ -0.53
CHMP1A-204ENST00000547687 PLAC8L1A1L4L8 177 aa11.76□□□□□ -0.53
CHMP1A-204ENST00000547687 OCIAD2Q56VL3 154 aa11.76□□□□□ -0.53
CHMP1A-204ENST00000547687 CEND1Q8N111 149 aa11.76□□□□□ -0.53
CHMP1A-204ENST00000547687 NHLRC4P0CG21 123 aaPredicted RBP11.76□□□□□ -0.53
CHMP1A-204ENST00000547687 TAL2Q16559 108 aa11.76□□□□□ -0.53
CHMP1A-204ENST00000547687 ZNF815PA8K554 130 aa11.75□□□□□ -0.53
CHMP1A-204ENST00000547687 FXYD2P54710 66 aa11.75□□□□□ -0.53
CHMP1A-204ENST00000547687 CEMP1Q6PRD7 247 aaPredicted RBP11.75□□□□□ -0.53
CHMP1A-204ENST00000547687 TM2D2Q9BX73 214 aa11.75□□□□□ -0.53
CHMP1A-204ENST00000547687 CSMD3Q7Z407 3707 aa11.75□□□□□ -0.53
CHMP1A-204ENST00000547687 TRBV7-3A0A075B6L6 115 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 CRYBA4P53673 196 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 KIR2DL5BQ8NHK3 375 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 FAM104AQ969W3 186 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 AMELXQ99217 191 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 IGKV2-29A2NJV5 120 aaPredicted RBP11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 K7EQD1 137 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 HIST1H4GQ99525 98 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 OVOL2Q9BRP0 275 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 SPANXA1Q9NS26 97 aa11.74□□□□□ -0.53
CHMP1A-204ENST00000547687 A0A0J9YXV3 536 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 TRBV10-1A0A0K0K1A3 114 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 GAGE12BA1L429 117 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 GAGE7O76087 117 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 GAGE12FP0CL80 117 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 GAGE12GP0CL81 117 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 GAGE12IP0CL82 117 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 APOC4P55056 127 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 RPL36AP83881 106 aaKnown RBP11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 RPL36ALQ969Q0 106 aaKnown RBP11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 UBE2D4Q9Y2X8 147 aa11.73□□□□□ -0.53
CHMP1A-204ENST00000547687 TRGV2A0A075B6R0 118 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 C9orf118A6NHY6 69 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 SMIM13P0DJ93 91 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 DEFB135Q30KP9 77 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 AMMECR1LQ6DCA0 310 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 SLC25A29Q8N8R3 303 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 RAB37Q96AX2 223 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 WWC2-AS2Q96NR7 200 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 X6R8D5 127 aa11.72□□□□□ -0.53
CHMP1A-204ENST00000547687 TMEM223A0PJW6 202 aa11.71□□□□□ -0.53
CHMP1A-204ENST00000547687 K7ERU9 68 aa11.71□□□□□ -0.53
CHMP1A-204ENST00000547687 ZNF22P17026 224 aaPredicted RBP11.71□□□□□ -0.53
CHMP1A-204ENST00000547687 SCGB1D4Q6XE38 83 aa11.7□□□□□ -0.54
CHMP1A-204ENST00000547687 RETNQ9HD89 108 aa11.7□□□□□ -0.54
CHMP1A-204ENST00000547687 RNASE13Q5GAN3 156 aaKnown RBP11.7□□□□□ -0.54
CHMP1A-204ENST00000547687 PLEKHB2Q96CS7 222 aa11.7□□□□□ -0.54
CHMP1A-204ENST00000547687 TSPEAR-AS2P59090 65 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 DAZ4Q86SG3 579 aaKnown RBP11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 DAZ3Q9NR90 486 aaKnown RBP11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 GAGE12JA6NER3 117 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 A8MZ25 164 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 H3BUT2 72 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 J3QQQ9 107 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 LEPROTO15243 131 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 UBE2D3P61077 147 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 UBE2D2P62837 147 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 MRPS36P82909 103 aaKnown RBP11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 GAGE4Q13068 117 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 GAGE5Q13069 117 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 GAGE13Q4V321 117 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 TM2D3Q9BRN9 247 aa11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 NHP2Q9NX24 153 aaKnown RBP11.69□□□□□ -0.54
CHMP1A-204ENST00000547687 STARD9Q9P2P6 4700 aa11.68□□□□□ -0.54
CHMP1A-204ENST00000547687 SMIM9A6NGZ8 99 aa11.68□□□□□ -0.54
CHMP1A-204ENST00000547687 SCGB1A1P11684 91 aa11.68□□□□□ -0.54
CHMP1A-204ENST00000547687 LGALS3P17931 250 aaKnown RBP11.68□□□□□ -0.54
CHMP1A-204ENST00000547687 Q6ZUT4 128 aa11.67□□□□□ -0.54
CHMP1A-204ENST00000547687 DGAT2L7PQ6IED9 249 aa11.67□□□□□ -0.54
CHMP1A-204ENST00000547687 NAA38Q9BRA0 125 aaKnown RBP11.67□□□□□ -0.54
CHMP1A-204ENST00000547687 TIMM21Q9BVV7 248 aa11.67□□□□□ -0.54
CHMP1A-204ENST00000547687 TENM2Q9NT68 2774 aa11.67□□□□□ -0.54
CHMP1A-204ENST00000547687 RYR3Q15413 4870 aa11.66□□□□□ -0.54
CHMP1A-204ENST00000547687 TRGV4A0A0C4DH28 118 aa11.66□□□□□ -0.54
CHMP1A-204ENST00000547687 TRBV6-4A0A1B0GX49 114 aa11.66□□□□□ -0.54
CHMP1A-204ENST00000547687 K7ERJ3 54 aa11.66□□□□□ -0.54
CHMP1A-204ENST00000547687 A0A0J9YY99 117 aa11.65□□□□□ -0.54
CHMP1A-204ENST00000547687 TINCRA0A1B0GVN0 87 aa11.65□□□□□ -0.54
CHMP1A-204ENST00000547687 SRSF9Q13242 221 aaKnown RBP eCLIP11.65□□□□□ -0.54
CHMP1A-204ENST00000547687 NTM-AS1Q6ZSK4 140 aa11.65□□□□□ -0.54
CHMP1A-204ENST00000547687 IGHV3-64A0A075B6Q5 118 aa11.65□□□□□ -0.54
CHMP1A-204ENST00000547687 C12orf74Q32Q52 190 aa11.64□□□□□ -0.55
CHMP1A-204ENST00000547687 GAGE10A6NGK3 116 aa11.64□□□□□ -0.55
CHMP1A-204ENST00000547687 FHL2Q14192 279 aa11.64□□□□□ -0.55
CHMP1A-204ENST00000547687 RNF183Q96D59 192 aa11.64□□□□□ -0.55
CHMP1A-204ENST00000547687 LOC100131303A0A0U1RQF7 123 aa11.63□□□□□ -0.55
CHMP1A-204ENST00000547687 A0A1W2PPM0 123 aa11.63□□□□□ -0.55
CHMP1A-204ENST00000547687 DEFB4AO15263 64 aa11.63□□□□□ -0.55
CHMP1A-204ENST00000547687 LINC00694P0DN24 101 aa11.63□□□□□ -0.55
CHMP1A-204ENST00000547687 SPATA25Q9BR10 227 aa11.63□□□□□ -0.55
CHMP1A-204ENST00000547687 A0A1B0GV72 72 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 DEFB130BP0DP73 79 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 DEFB130AP0DP74 79 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 UBE2D1P51668 147 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 GTSF1LQ9H1H1 148 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 IGHV4-28A0A0C4DH34 117 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 OR5A1Q8NGJ0 315 aa11.62□□□□□ -0.55
CHMP1A-204ENST00000547687 GEMIN7Q9H840 131 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms