RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 LINC00173Q6ZV60 143 aa2.38□□□□□ -2.03
SNHG1-220ENST00000544550 PHF5AQ7RTV0 110 aaKnown RBP2.38□□□□□ -2.03
SNHG1-220ENST00000544550 TYMSOSQ8TAI1 123 aa2.38□□□□□ -2.03
SNHG1-220ENST00000544550 PGLYRP4Q96LB8 373 aa2.38□□□□□ -2.03
SNHG1-220ENST00000544550 WDR61Q9GZS3 305 aaKnown RBP2.38□□□□□ -2.03
SNHG1-220ENST00000544550 NAA50Q9GZZ1 169 aaKnown RBP2.38□□□□□ -2.03
SNHG1-220ENST00000544550 C11orf1Q9H5F2 150 aa2.38□□□□□ -2.03
SNHG1-220ENST00000544550 RPP21Q9H633 154 aaKnown RBP2.38□□□□□ -2.03
SNHG1-220ENST00000544550 IGLV4-69A0A075B6H9 119 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 IGKV3OR2-268A0A0C4DH90 116 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 GRIFINA4D1Z8 144 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 NAP1L6A6NFF2 107 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 FAM25EA8MYX2 175 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 M0R036 132 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 NDUFV3P56181 108 aaKnown RBP2.37□□□□□ -2.03
SNHG1-220ENST00000544550 RPL18AQ02543 176 aaKnown RBP2.37□□□□□ -2.03
SNHG1-220ENST00000544550 CNPY1Q3B7I2 92 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 PYDC2Q56P42 97 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 LINC00518Q8N0U6 118 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 LINC00337Q8N6G1 96 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 RETNLBQ9BQ08 111 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 ZNF471Q9BX82 626 aaPredicted RBP2.37□□□□□ -2.03
SNHG1-220ENST00000544550 PPDPFQ9H3Y8 114 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 EPDR1Q9UM22 224 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 ARL2-SNX15V9GYD0 113 aa2.37□□□□□ -2.03
SNHG1-220ENST00000544550 ZNF861PO60384 105 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 BCL2P10415 239 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 UBE2BP63146 152 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 COTL1Q14019 142 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 SPANXN1Q5VSR9 72 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 AMMECR1LQ6DCA0 310 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 NUP35Q8NFH5 326 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 SCGB1C1Q8TD33 95 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 CAMK2N2Q96S95 79 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 SDHCQ99643 169 aaPredicted RBP2.36□□□□□ -2.03
SNHG1-220ENST00000544550 OCR1Q9BZK8 76 aa2.36□□□□□ -2.03
SNHG1-220ENST00000544550 TMSB15BA0A087X1C1 80 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 C19orf71A6NCJ1 209 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 PCP4L1A6NKN8 68 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 CENPXA8MT69 81 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.35□□□□□ -2.03
SNHG1-220ENST00000544550 SH2D1AO60880 128 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 CXCL1P09341 107 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 ESDP10768 282 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 ZNF25P17030 456 aaPredicted RBP2.35□□□□□ -2.03
SNHG1-220ENST00000544550 RPL12P30050 165 aaKnown RBP2.35□□□□□ -2.03
SNHG1-220ENST00000544550 XCL1P47992 114 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 MEF2BQ02080 365 aaPredicted RBP2.35□□□□□ -2.03
SNHG1-220ENST00000544550 SS18Q15532 418 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 FP248Q71RG6 208 aaPredicted RBP2.35□□□□□ -2.03
SNHG1-220ENST00000544550 Q86TA4 180 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 Q8N377 158 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 LINC00304Q8N9R0 145 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 OR5A1Q8NGJ0 315 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 LINC00526Q96FQ7 95 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 AP1S3Q96PC3 154 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 TMEM167BQ9NRX6 74 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 ZFP30Q9Y2G7 519 aa2.35□□□□□ -2.03
SNHG1-220ENST00000544550 A0A1B0GVG6 124 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 A0A1W2PRE2 83 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 M0QY20 66 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 CCL25O15444 150 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 SNAI2O43623 268 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 NUPR1O60356 82 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 OR5AL1P0C617 328 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 STAG3L2P0CL84 134 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 STAG3L3P0CL85 134 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 ARL14EPLP0DKL9 152 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 CRIP1P50238 77 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 NKX2-5P52952 324 aaPredicted RBP2.34□□□□□ -2.03
SNHG1-220ENST00000544550 RNASEKQ6P5S7 137 aaKnown RBP2.34□□□□□ -2.03
SNHG1-220ENST00000544550 OR10AG1Q8NH19 301 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 HIST1H2BAQ96A08 127 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 TMEM101Q96IK0 257 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 BTF3L4Q96K17 158 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 IMMP2LQ96T52 175 aa2.34□□□□□ -2.03
SNHG1-220ENST00000544550 NKX6-2Q9C056 277 aaPredicted RBP2.34□□□□□ -2.03
SNHG1-220ENST00000544550 LINC00959A0A1B0GUT2 108 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 M0QXV9 152 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 PEX7O00628 323 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 HMGB3O15347 200 aaKnown RBP2.33□□□□□ -2.04
SNHG1-220ENST00000544550 BCL2L11O43521 198 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 NCR2O95944 276 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 CXorf1O96002 111 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 MGPP08493 103 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 GCHFRP30047 84 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 S100A5P33763 92 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 RPL28P46779 137 aaKnown RBP2.33□□□□□ -2.04
SNHG1-220ENST00000544550 CDC34P49427 236 aaPredicted RBP2.33□□□□□ -2.04
SNHG1-220ENST00000544550 UBE2G1P62253 170 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 MT1HP80294 61 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 IL15RAQ13261 267 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 TRIQKQ629K1 86 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 RASL11AQ6T310 242 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 FAM19A5Q7Z5A7 132 aaPredicted RBP2.33□□□□□ -2.04
SNHG1-220ENST00000544550 FMC1Q96HJ9 113 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 NIT2Q9NQR4 276 aa2.33□□□□□ -2.04
SNHG1-220ENST00000544550 RPL37AP8A6NKH3 93 aa2.32□□□□□ -2.04
SNHG1-220ENST00000544550 H0Y8G0 127 aa2.32□□□□□ -2.04
SNHG1-220ENST00000544550 COX7A2LO14548 114 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms