RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 IGHV3-73A0A0B4J1V6 119 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 A0A0J9YXV3 536 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 TRBV6-4A0A1B0GX49 114 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 GIG44P09565 113 aaPredicted RBP7.08□□□□□ -1.28
SS18-205ENST00000542420 TSPEAR-AS2P59090 65 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 TEN1Q86WV5 123 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 CSNK1G2-AS1Q8NCQ2 148 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 CRYBG3Q68DQ2 2970 aa7.08□□□□□ -1.28
SS18-205ENST00000542420 TRGV1A0A0A0MS02 117 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 UBE2D3P61077 147 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 UBE2D2P62837 147 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 MXRA5Q9NR99 2828 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 EPG5Q9HCE0 2579 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 ZANQ9Y493 2812 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.07□□□□□ -1.28
SS18-205ENST00000542420 A0A0B4J2C4 111 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 HIST2H2BCQ6DN03 193 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 OPRPNQ99935 248 aaPredicted RBP7.07□□□□□ -1.28
SS18-205ENST00000542420 PPDPFQ9H3Y8 114 aa7.07□□□□□ -1.28
SS18-205ENST00000542420 MYO9AB2RTY4 2548 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 A0A0J9YXY3 114 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 PLAC8L1A1L4L8 177 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 EMP1P54849 157 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 HERVK_113P63121 156 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 LINC00482Q8N8I6 264 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 C11orf44Q8N8P7 122 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 SPANXDQ9BXN6 97 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 SPANXCQ9NY87 97 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 SMIM9A6NGZ8 99 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 IGHV3-30-3P0DP02 117 aa7.06□□□□□ -1.28
SS18-205ENST00000542420 TRBV20-1A0A075B6N2 111 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 KIR2DL5BQ8NHK3 375 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 VSIG2Q96IQ7 327 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 PDZD2O15018 2839 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 ANK3Q12955 4377 aaKnown RBP7.05□□□□□ -1.28
SS18-205ENST00000542420 CRLF1O75462 422 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 LINC00612Q8N6U2 182 aa7.05□□□□□ -1.28
SS18-205ENST00000542420 FLNAP21333 2647 aaKnown RBP7.04□□□□□ -1.28
SS18-205ENST00000542420 PRM2P04554 102 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 IFITM1P13164 125 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 DGAT2L7PQ6IED9 249 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 Q6Q795 121 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 Q6ZTI0 123 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 C10orf126Q8N4M7 172 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.04□□□□□ -1.28
SS18-205ENST00000542420 IGKV2-29A2NJV5 120 aaPredicted RBP7.04□□□□□ -1.28
SS18-205ENST00000542420 M0QXV9 152 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 LY6G6DO95868 133 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 PF4P02776 101 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 LINC00694P0DN24 101 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 C9orf66Q5T8R8 295 aa7.04□□□□□ -1.28
SS18-205ENST00000542420 LCE2DQ5TA82 110 aaPredicted RBP7.04□□□□□ -1.28
SS18-205ENST00000542420 IGHV3OR16-12A0A075B7B8 117 aa7.03□□□□□ -1.28
SS18-205ENST00000542420 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
SS18-205ENST00000542420 COPS9Q8WXC6 57 aa7.03□□□□□ -1.28
SS18-205ENST00000542420 NOP10Q9NPE3 64 aaKnown RBP7.03□□□□□ -1.28
SS18-205ENST00000542420 PRO1854Q9UHT4 67 aa7.03□□□□□ -1.28
SS18-205ENST00000542420 AKAP9Q99996 3911 aa7.03□□□□□ -1.28
SS18-205ENST00000542420 TMEM262E9PQX1 116 aa7.02□□□□□ -1.28
SS18-205ENST00000542420 NDUFA1O15239 70 aa7.02□□□□□ -1.28
SS18-205ENST00000542420 CFC1BP0CG36 223 aa7.02□□□□□ -1.28
SS18-205ENST00000542420 CFC1P0CG37 223 aa7.02□□□□□ -1.28
SS18-205ENST00000542420 GAGE2BQ13066 116 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 GAGE2EQ4V326 116 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 ANKRD29Q8N6D5 301 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 DEFB104AQ8WTQ1 72 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 TMEM243Q9BU79 118 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 GAGE2DQ9UEU5 116 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 NDUFA12Q9UI09 145 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 CENPEQ02224 2701 aa7.02□□□□□ -1.29
SS18-205ENST00000542420 TMEM101Q96IK0 257 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 LITAFQ99732 161 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 Q9UF83 564 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 PSMB2P49721 201 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 MIAQ16674 131 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 CDC42SE2Q9NRR3 84 aa7.01□□□□□ -1.29
SS18-205ENST00000542420 TRGV2A0A075B6R0 118 aa7□□□□□ -1.29
SS18-205ENST00000542420 IGHV3-38A0A0C4DH36 116 aa7□□□□□ -1.29
SS18-205ENST00000542420 TCL1BO95988 128 aa7□□□□□ -1.29
SS18-205ENST00000542420 RPL35AP18077 110 aaKnown RBP7□□□□□ -1.29
SS18-205ENST00000542420 KRTAP10-3P60369 221 aa7□□□□□ -1.29
SS18-205ENST00000542420 CEMP1Q6PRD7 247 aaPredicted RBP7□□□□□ -1.29
SS18-205ENST00000542420 NTM-AS1Q6ZSK4 140 aa7□□□□□ -1.29
SS18-205ENST00000542420 CSMD2Q7Z408 3487 aa7□□□□□ -1.29
SS18-205ENST00000542420 UBE2L6O14933 153 aa7□□□□□ -1.29
SS18-205ENST00000542420 LINC00242Q5T6M2 205 aa7□□□□□ -1.29
SS18-205ENST00000542420 HIST2H2BDQ6DRA6 164 aa7□□□□□ -1.29
SS18-205ENST00000542420 LINC01600Q96MT4 127 aa7□□□□□ -1.29
SS18-205ENST00000542420 WNK1Q9H4A3 2382 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 TLN2Q9Y4G6 2542 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 A4D1N5 150 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 IGHV3-33P01772 117 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 CIRBPQ14011 172 aaKnown RBP6.99□□□□□ -1.29
SS18-205ENST00000542420 FHL2Q14192 279 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 MUSTN1Q8IVN3 82 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 SONP18583 2426 aaKnown RBP6.99□□□□□ -1.29
SS18-205ENST00000542420 TRGV4A0A0C4DH28 118 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 LYRM9A8MSI8 78 aa6.99□□□□□ -1.29
SS18-205ENST00000542420 WIPF1O43516 503 aa6.98□□□□□ -1.29
SS18-205ENST00000542420 MEIG1Q5JSS6 88 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms