RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 RPL23P62829 140 aaKnown RBP9.78□□□□□ -0.84
RTN3-211ENST00000542238 COA6Q5JTJ3 125 aaKnown RBP9.78□□□□□ -0.84
RTN3-211ENST00000542238 WDR73Q6P4I2 378 aa9.78□□□□□ -0.84
RTN3-211ENST00000542238 ANAPC16Q96DE5 110 aa9.78□□□□□ -0.84
RTN3-211ENST00000542238 UBE2L6O14933 153 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 SLPIP03973 132 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 CFAP161Q6P656 301 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 OR10D4PQ8NGN7 298 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 TPPP3Q9BW30 176 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 PLAC8Q9NZF1 115 aa9.77□□□□□ -0.85
RTN3-211ENST00000542238 IGLV4-60A0A075B6I1 120 aa9.76□□□□□ -0.85
RTN3-211ENST00000542238 ADIRFQ15847 76 aa9.76□□□□□ -0.85
RTN3-211ENST00000542238 SUMO4Q6EEV6 95 aa9.76□□□□□ -0.85
RTN3-211ENST00000542238 BTF3L4Q96K17 158 aa9.76□□□□□ -0.85
RTN3-211ENST00000542238 RASL11AQ6T310 242 aa9.75□□□□□ -0.85
RTN3-211ENST00000542238 FER1L6-AS1Q8NA97 138 aa9.75□□□□□ -0.85
RTN3-211ENST00000542238 GFRA4Q9GZZ7 299 aa9.75□□□□□ -0.85
RTN3-211ENST00000542238 TRBV20OR9-2A0A075B6H5 130 aa9.74□□□□□ -0.85
RTN3-211ENST00000542238 RPS20P60866 119 aaKnown RBP9.74□□□□□ -0.85
RTN3-211ENST00000542238 CACNG7P62955 275 aa9.74□□□□□ -0.85
RTN3-211ENST00000542238 COX6A2Q02221 97 aa9.74□□□□□ -0.85
RTN3-211ENST00000542238 GTSF1Q8WW33 167 aa9.74□□□□□ -0.85
RTN3-211ENST00000542238 PGLYRP4Q96LB8 373 aa9.74□□□□□ -0.85
RTN3-211ENST00000542238 AMTP48728 403 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 GNG4P50150 75 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 MAJINQ3KP22 176 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 LINC01600Q96MT4 127 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 IMMP2LQ96T52 175 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 HIST1H2BLQ99880 126 aa9.73□□□□□ -0.85
RTN3-211ENST00000542238 GAGE12HA6NDE8 117 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 IGLC6P0CF74 106 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 COTL1Q14019 142 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 CENPWQ5EE01 88 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 LINC00469Q8N7U9 141 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 OR2D3Q8NGH3 330 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 PACRGQ96M98 296 aaPredicted RBP9.72□□□□□ -0.85
RTN3-211ENST00000542238 RNF213Q63HN8 5207 aa9.72□□□□□ -0.85
RTN3-211ENST00000542238 IGKV2-24A0A0C4DH68 120 aa9.71□□□□□ -0.86
RTN3-211ENST00000542238 XKRY2A2RUG3 117 aa9.71□□□□□ -0.86
RTN3-211ENST00000542238 F2Z2F3 143 aa9.71□□□□□ -0.86
RTN3-211ENST00000542238 FABP4P15090 132 aa9.71□□□□□ -0.86
RTN3-211ENST00000542238 JOSD1Q15040 202 aaPredicted RBP9.71□□□□□ -0.86
RTN3-211ENST00000542238 C15orf56Q8N910 161 aa9.71□□□□□ -0.86
RTN3-211ENST00000542238 LRP2P98164 4655 aa9.7□□□□□ -0.86
RTN3-211ENST00000542238 IGKV3OR2-268A0A0C4DH90 116 aa9.7□□□□□ -0.86
RTN3-211ENST00000542238 PRR3P79522 188 aaKnown RBP9.7□□□□□ -0.86
RTN3-211ENST00000542238 STPG4Q8N801 248 aa9.7□□□□□ -0.86
RTN3-211ENST00000542238 PRSS3P2Q8NHM4 247 aa9.7□□□□□ -0.86
RTN3-211ENST00000542238 C19orf71A6NCJ1 209 aa9.69□□□□□ -0.86
RTN3-211ENST00000542238 TSTD3H0UI37 97 aa9.69□□□□□ -0.86
RTN3-211ENST00000542238 HIGD2BQ4VC39 106 aa9.69□□□□□ -0.86
RTN3-211ENST00000542238 PDZD11Q5EBL8 140 aa9.69□□□□□ -0.86
RTN3-211ENST00000542238 TRAV9-1A0A075B6T8 112 aa9.68□□□□□ -0.86
RTN3-211ENST00000542238 AMMECR1LQ6DCA0 310 aa9.68□□□□□ -0.86
RTN3-211ENST00000542238 REG3GQ6UW15 175 aa9.68□□□□□ -0.86
RTN3-211ENST00000542238 FAM231DQ6ZW35 169 aa9.68□□□□□ -0.86
RTN3-211ENST00000542238 LINC01551Q86U37 167 aa9.68□□□□□ -0.86
RTN3-211ENST00000542238 A0A0J9YXV3 536 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 NTF3P20783 257 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 LYZL1Q6UWQ5 148 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 OCC1Q8TAD7 63 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 CHCHD10Q8WYQ3 142 aaPredicted RBP9.67□□□□□ -0.86
RTN3-211ENST00000542238 LINC00474Q9P2X8 69 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 PKIGQ9Y2B9 76 aa9.67□□□□□ -0.86
RTN3-211ENST00000542238 DDTP30046 118 aa9.66□□□□□ -0.86
RTN3-211ENST00000542238 SPINK6Q6UWN8 80 aa9.66□□□□□ -0.86
RTN3-211ENST00000542238 TMEM18Q96B42 140 aa9.66□□□□□ -0.86
RTN3-211ENST00000542238 C14orf144Q96I85 54 aa9.66□□□□□ -0.86
RTN3-211ENST00000542238 GVQW2A0A096LPI5 108 aaPredicted RBP9.65□□□□□ -0.86
RTN3-211ENST00000542238 K7EN84 100 aa9.65□□□□□ -0.86
RTN3-211ENST00000542238 CT83Q5H943 113 aa9.65□□□□□ -0.86
RTN3-211ENST00000542238 RNASEKQ6P5S7 137 aaKnown RBP9.65□□□□□ -0.86
RTN3-211ENST00000542238 TNXBP22105 4242 aa9.64□□□□□ -0.87
RTN3-211ENST00000542238 A0A096LNI7 61 aa9.64□□□□□ -0.87
RTN3-211ENST00000542238 LBHQ53QV2 105 aaPredicted RBP9.64□□□□□ -0.87
RTN3-211ENST00000542238 OSTCQ9NRP0 149 aa9.64□□□□□ -0.87
RTN3-211ENST00000542238 FAM231BA6NCW3 169 aa9.63□□□□□ -0.87
RTN3-211ENST00000542238 H7C423 109 aa9.63□□□□□ -0.87
RTN3-211ENST00000542238 NCR2O95944 276 aa9.63□□□□□ -0.87
RTN3-211ENST00000542238 ODF1Q14990 250 aa9.63□□□□□ -0.87
RTN3-211ENST00000542238 TWIST1Q15672 202 aa9.63□□□□□ -0.87
RTN3-211ENST00000542238 KRTAP10-8P60410 259 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 GATD1Q8NB37 220 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 NUDT10Q8NFP7 164 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 NUDT11Q96G61 164 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 C2orf88Q9BSF0 95 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 TRAPPC1Q9Y5R8 145 aa9.62□□□□□ -0.87
RTN3-211ENST00000542238 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.61□□□□□ -0.87
RTN3-211ENST00000542238 TRAV26-2A0A0B4J265 109 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 IGKV2-29A2NJV5 120 aaPredicted RBP9.61□□□□□ -0.87
RTN3-211ENST00000542238 APCSP02743 223 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 FGF6P10767 208 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 CTRLP40313 264 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 FOXA3P55318 350 aaPredicted RBP9.61□□□□□ -0.87
RTN3-211ENST00000542238 FOXI1Q12951 378 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 Q6ZRP5 223 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 PRO1933Q9H354 126 aa9.61□□□□□ -0.87
RTN3-211ENST00000542238 RPP21Q9H633 154 aaKnown RBP9.61□□□□□ -0.87
RTN3-211ENST00000542238 XCL1P47992 114 aa9.6□□□□□ -0.87
RTN3-211ENST00000542238 SMIM15Q7Z3B0 74 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms